Tissue-dependent expression of a novel splice variant of the human oestrogen receptor

We have isolated a novel splice variant of ER mRNA from normal endometrial tissue using RT/PCR. The variant contains an unusual splice junction formed by splicing sequences within exons 4 and 7 together. The translated protein product would be predicted to lack part of exon 4, all of exons 5 and 6 and, due to a missense alignment at the new splice junction, the remaining sequence from exon 7 would be translated out of frame and terminate at the exon 7/8 splice junction. As a result, the protein would lack most of the hormone binding domain (HBD) and the major oestrogen-dependent transactivating region (AF-2), but still contain the DNA binding domain (DNA-BD) and N-terminal transactivating region (AF-1). In contrast to the exon 5 deleted variant of ER (delta 5), which was expressed in both normal endometrium and liver, this novel variant was present in endometrium but not in liver samples. These results confirm that some ER splice variants are expressed in normal, non-malignant oestrogen responsive tissues. In addition, they demonstrate the tissue specific expression of a novel and interesting splice variant of ER in these normal tissues.