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The Ribosomal Database Project (RDP)

B L Maidak1, G J Olsen, N Larsen

  • 1Department of Microbiology, University of Illinois, Urbana 61801-3704, USA.

Nucleic Acids Research
|January 1, 1996
PubMed
Summary
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The Ribosomal Database Project (RDP) provides curated ribosome data, including ribosomal RNA (rRNA) sequence alignments and phylogenetic trees. It offers analysis services and software for researchers studying molecular evolution and microbial communities.

Area of Science:

  • Microbiology
  • Bioinformatics
  • Molecular Biology

Background:

  • Ribosomal RNA (rRNA) sequences are crucial for understanding phylogenetic relationships and microbial community structures.
  • Access to curated, phylogenetically analyzed rRNA data is essential for accurate biological research.

Purpose of the Study:

  • To introduce and describe the Ribosomal Database Project (RDP).
  • To highlight the resources and services offered by the RDP for rRNA data analysis.

Main Methods:

  • Curated collection and organization of ribosomal RNA (rRNA) sequences.
  • Development of phylogenetically ordered alignments and phylogenetic trees.
  • Provision of analysis services and software tools.

Main Results:

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  • The RDP offers a comprehensive repository of ribosome-related data.
  • Services include automated alignment, phylogenetic placement, and quality control for rRNA sequences.
  • Data and tools are accessible via multiple platforms including FTP, email, gopher, and the WWW.

Conclusions:

  • The RDP serves as a valuable resource for researchers in microbiology, molecular evolution, and related fields.
  • The project facilitates the analysis and interpretation of rRNA sequence data.
  • Continued development and accessibility of the RDP support advancements in microbial genomics and systematics.