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Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
The FHIT gene 3p14.2 is abnormal in lung cancer
G Sozzi1, M L Veronese, M Negrini
1Kimmel Cancer Center, Jefferson Medical College, Philadelphia, Pennsylvania 19107, USA.
Abstract:
To determine the role of the FHIT gene, which encompasses the fragile site at 3p14.2, we analyzed 59 tumors of the small cell and non-small cell type by reverse transcription of FHIT mRNA, followed by PCR amplification and sequencing of products. Allelic losses affecting the gene were evaluated by microsatellite polymorphism analysis and genomic alterations by hybridization using cDNA and genomic probes. Small cell lung tumors (80%) and non-small cell lung cancers (40%) showed abnormalities in RNA transcripts of FHIT, and 76% of the tumors exhibited loss of FHIT alleles. Abnormal lung tumor transcripts lack two or more exons of the FHIT gene. Small cell lung cancer tumors and cell lines were analyzed by Southern blotting and showed rearranged BamHI fragments. These data suggest a critical role of the FHIT gene in lung carcinogenesis.
Insights
The FHIT gene plays a crucial role in lung cancer development. Abnormalities in FHIT gene transcripts and loss of FHIT alleles were frequently observed in both small cell and non-small cell lung tumors, indicating its significance in lung carcinogenesis.
Area of Science:
- Molecular biology
- Cancer genetics
- Oncology
Background:
- The FHIT (Fragile Histidine Triad) gene, located at the 3p14.2 fragile site, is a potential tumor suppressor.
- Alterations in the FHIT gene have been implicated in various human cancers, but its specific role in lung carcinogenesis requires further elucidation.
Purpose of the Study:
- To investigate the role of the FHIT gene in the development of lung cancer.
- To analyze FHIT gene alterations in both small cell lung cancer (SCLC) and non-small cell lung cancer (NSCLC).
Main Methods:
- Analysis of FHIT messenger RNA (mRNA) transcripts using reverse transcription-polymerase chain reaction (RT-PCR) and sequencing.
- Evaluation of FHIT gene allelic loss via microsatellite polymorphism analysis.
- Detection of genomic alterations using complementary DNA (cDNA) and genomic probes, including Southern blotting.
Main Results:
- Abnormal FHIT mRNA transcripts were detected in 80% of SCLC and 40% of NSCLC tumors.
- Loss of FHIT alleles was observed in 76% of the analyzed lung tumors.
- Abnormal transcripts often lacked two or more exons, and SCLC samples showed rearranged FHIT gene fragments.
Conclusions:
- The FHIT gene is frequently altered in lung tumors, suggesting its critical involvement in lung carcinogenesis.
- FHIT gene abnormalities, including transcript and allelic alterations, are significant in the pathogenesis of both SCLC and NSCLC.
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