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VDJ-Seq: Deep Sequencing Analysis of Rearranged Immunoglobulin Heavy Chain Gene to Reveal Clonal Evolution Patterns of B Cell Lymphoma
Published on: December 28, 2015
VH and VL gene elements that encode human antibodies to DNA
1Department of Pediatrics, Medical College of Pennsylvania, Hahnemann University, Philadelphia 19102, USA.
Clinical Immunology and Immunopathology
|July 1, 1996
Summary
Researchers sequenced DNA-binding antibodies, finding common variable heavy (VH) gene elements in low-affinity antibodies. This suggests DNA may not be the primary driver for high-affinity antibody development.
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- Antibodies against DNA are crucial in autoimmune diseases.
- Previous research suggested antigen-driven affinity maturation for high-affinity anti-DNA antibodies.
Purpose of the Study:
- To determine the cDNA sequence of variable regions of heavy and light chains of low-affinity DNA-binding antibodies.
- To investigate the genetic basis of antibody reactivity to DNA.
Main Methods:
- cDNA sequencing of antibody variable heavy and light chains.
- Analysis of Variable Heavy (VH) and Variable Light (VL) gene element utilization.
- Comparison of gene usage in low-affinity versus high-affinity anti-DNA antibodies.
Main Results:
- Identified specific VH gene elements (VH26, VH1.9III) in low-affinity anti-DNA antibodies, associated with novel D gene-encoded CDR3s.
- Discovered previously unidentified VL gene elements in these antibodies.
- Found that only a subset of high-affinity anti-DNA antibodies utilize these low-affinity VH genes.
Conclusions:
- The limited repertoire of VH genes in low-affinity anti-DNA antibodies suggests most relevant VH gene elements have been identified.
- The data indicates that DNA is unlikely to be the sole driving antigen for high-affinity antibody development, challenging previous assumptions.
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