A complete genomic screen for multiple sclerosis underscores a role for the major histocompatability complex. The Multiple Sclerosis Genetics Group
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Updated: Nov 5, 2026

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
J L Haines1, M Ter-Minassian, A Bazyk
1Molecular Neurogenetics Unit, Massachusetts General Hospital, Boston 02129, USA.
Abstract:
Multiple sclerosis (MS), an inflammatory autoimmune demyelinating disorder of the central nervous system, is the most common cause of acquired neurological dysfunction arising in the second to fourth decades of life. A genetic component to MS is indicated by an increased relative risk of 20-40 to siblings compared to the general population (lambda s), and an increased concordance rate in monozygotic compared to dizygotic twins. Association and/or linkage studies to candidate genes have produced many reports of significant genetic effects including those for the major histocompatability complex (MHC; particularly the HLA-DR2 allele), immunoglobulin heavy chain (IgH), T-cell receptor (TCR) and myelin basic protein (MBP) loci. With the exception of the MHC, however, these results have been difficult to replicate and/or apply beyond isolated populations. We have therefore conducted a two-stage, multi-analytical genomic screen to identify genomic regions potentially harbouring MS susceptibility genes. We genotyped 443 markers and 19 such regions were identified. These included the MHC region on 6p, the only region with a consistently reported genetic effect. However, no single locus generated overwhelming evidence of linkage. Our results suggest that a multifactorial aetiology, including both environmental and multiple genetic factors of moderate effect, is more likely than an aetiology consisting of simple mendelian disease gene(s).
Insights
Multiple sclerosis (MS) susceptibility involves complex genetics. A large genomic screen identified 19 regions, suggesting multiple moderate-effect genes and environmental factors contribute to this autoimmune disorder.
Area of Science:
- Neuroimmunology
- Genetics
- Autoimmune Diseases
Background:
- Multiple sclerosis (MS) is a common autoimmune demyelinating disorder of the central nervous system, affecting young adults.
- Genetic factors contribute to MS risk, evidenced by familial aggregation and twin studies.
- Previous candidate gene studies, particularly implicating the Major Histocompatibility Complex (MHC), have yielded inconsistent results.
Purpose of the Study:
- To conduct a comprehensive genomic screen to identify novel genetic regions associated with MS susceptibility.
- To investigate the genetic architecture of MS beyond the MHC region.
Main Methods:
- A two-stage, multi-analytical genomic screen was employed.
- 443 genetic markers were genotyped across relevant populations.
- Linkage analysis was performed to identify regions harboring MS susceptibility genes.
Main Results:
- Nineteen distinct genomic regions potentially linked to MS susceptibility were identified.
- The MHC region on chromosome 6p was among the identified regions, consistent with prior research.
- No single genetic locus demonstrated overwhelming evidence for linkage, indicating complex inheritance patterns.
Conclusions:
- The genetic basis of MS is likely multifactorial, involving multiple genes with moderate effects.
- Environmental factors likely play a significant role alongside genetic predisposition.
- The findings challenge simple Mendelian inheritance models for MS etiology.
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