A vaccinia virus core protein, p39, is membrane associated
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Updated: Jul 31, 2026

Vaccinia Virus Infection & Temporal Analysis of Virus Gene Expression: Part 3
Published on: April 13, 2009
S Cudmore1, R Blasco, R Vincentelli
1Cell Biology Program, European Molecular Biology Laboratory, Heidelberg, Germany.
Abstract:
We describe herein the characterization of p39, the product of the A4L gene of vaccinia virus. By immunolabelling of thawed cryosections from infected HeLa cells, we show that this protein is initially located in the central region, or viroplasm, of the viral factories, as well as in the immature virions, with very small amounts of labelling observed on the surrounding membranes. The localization of p39 changes dramatically during the transition of the immature virion to the intracellular mature virus (IMV), coincident with the appearance of the core structure in the center of the IMV, with p39 located between this core and the surrounding membranes. Complementary biochemical data, such as partitioning into the Triton X-114 detergent phase and stripping of the viral membranes with Nonidet P-40 and dithiothreitol, suggest that p39 is associated with the innermost of the two membranes surrounding the core. Sodium carbonate treatment also indicates that p39 is associated with membranes, even at the early stages of viral assembly. However, following in vitro translation of p39 in the presence of microsomal membranes, we failed to detect any association of the independently expressed protein with membranes. We also failed to detect any posttranslational acylation of p39 with myristate or palmitate, suggesting that p39 does not achieve its membrane association through lipid anchors. Therefore, p39 is most likely membrane associated through an interaction with an integral membrane protein(s) present in the innermost of the two membranes surrounding the IMV. These data, together with our recent data showing that p39 colocalizes with the spike-like protrusions on the IMV core (N. Roos, M. Cyrklaff, S. Cudmore, R. Blasco, J. Krijnse-Locker, and G. Griffiths, EMBO J. 15:2343-2355, 1996), suggest that p39 may form part of this spike and that it possibly functions as a matrix-like linker protein between the core and the innermost of the two membranes surrounding the IMV.
Insights
The vaccinia virus protein p39, encoded by the A4L gene, is localized within viral factories and immature virions. It associates with the inner membrane of the intracellular mature virus (IMV), potentially forming spike structures and linking the core to the membrane.
Area of Science:
- Virology
- Molecular Biology
- Cell Biology
Background:
- Vaccinia virus assembly involves complex protein-lipid interactions.
- Understanding viral protein localization is crucial for deciphering replication mechanisms.
Purpose of the Study:
- To characterize the localization and membrane association of the vaccinia virus p39 protein.
- To elucidate the role of p39 in the formation of intracellular mature virus (IMV).
Main Methods:
- Immunolabelling of infected HeLa cell cryosections.
- Biochemical assays including Triton X-114 partitioning and detergent stripping.
- In vitro translation and membrane association studies.
Main Results:
- p39 is initially found in viral factories and immature virions, then localizes to the inner membrane of IMVs.
- Biochemical data indicate p39 associates with the innermost viral membrane, not via lipid anchors.
- p39 does not associate with membranes when independently expressed, suggesting interaction with other viral proteins.
Conclusions:
- p39 is likely membrane-associated through interactions with integral membrane proteins.
- p39 may form part of the IMV core spike structure.
- p39 potentially functions as a matrix-like linker protein in vaccinia virus assembly.
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