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Updated: Jul 31, 2026

Measuring Single-Cell Mitochondrial DNA Copy Number and Heteroplasmy Using Digital Droplet Polymerase Chain Reaction
Published on: July 12, 2022
Age-related extensive fragmentation of mitochondrial DNA into minicircles
M Hayakawa1, K Katsumata, M Yoneda
1Department of Biomedical Chemistry, Faculty of Medicine, University of Nagoya, Japan.
Abstract:
In normal human hearts, a progressive age-related fragmentation of mitochondrial (mt) DNA into various-sized deleted (delta) mtDNA up to 358 types was documented by a novel total-detection system for deletions. The delta mtDNA lacking replication origin(s), minicircles, accumulated up to 280 types out of the 358, suggesting a yet unknown replication mechanism in human. Wild-type mtDNA decreased linearly down to 11% of the total with age negatively correlated with delta mtDNA and oxidized nucleoside, 8-hydroxydeoxyguanosine. A remarkable mirror image observed in delta mtDNA size distribution as well implies that random hydroxyl-radical attacks resulted in double-strand break and rejoining of mtDNA as a preferable mechanism to form various delta mtDNA of closed circular duplex. These facts support the 'redox mechanism of aging.'
Insights
Aging human hearts show fragmented mitochondrial DNA (mtDNA) with over 350 types of deletions. This fragmentation, linked to oxidative stress, supports the redox mechanism of aging.
Area of Science:
- Mitochondrial biology
- Aging research
- Molecular genetics
Background:
- Mitochondrial DNA (mtDNA) fragmentation is a hallmark of aging.
- Previous studies have identified various mtDNA deletions, but a comprehensive analysis in aging human hearts was lacking.
Purpose of the Study:
- To investigate the types and accumulation of deleted mtDNA (delta mtDNA) in normal human hearts with age.
- To explore the underlying mechanisms of mtDNA fragmentation and its relationship with oxidative stress and aging.
Main Methods:
- Utilized a novel total-detection system to identify and quantify various-sized delta mtDNA fragments.
- Analyzed the correlation between wild-type mtDNA levels, delta mtDNA types, and oxidative damage markers (8-hydroxydeoxyguanosine).
Main Results:
- Documented up to 358 types of age-related delta mtDNA in human hearts.
- Observed accumulation of minicircles (delta mtDNA lacking replication origins), suggesting novel replication mechanisms.
- Found a linear decrease in wild-type mtDNA with age, negatively correlated with delta mtDNA and oxidative damage.
- Identified a mirror image in delta mtDNA size distribution, supporting double-strand break and rejoining via hydroxyl-radical attack.
Conclusions:
- Age-related mtDNA fragmentation is extensive in human hearts.
- Oxidative stress is a primary driver of mtDNA fragmentation, supporting the 'redox mechanism of aging'.
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