Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Object-oriented data handler for sequence analysis software development

A A Ptitsyn1, D A Grigorovich

  • 1Institute of Cytology and Genetics, Novosibirsk, Russia. ptitsyn@cgi.nsk.su

Computer Applications in the Biosciences : CABIOS
|December 1, 1995
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Delta sleep-inducing peptide and glucocorticoid-induced leucine zipper: potential links between circadian mechanisms and obesity?

Obesity reviews : an official journal of the International Association for the Study of Obesity·2009
Same author

Circadian rhythm of osteocalcin in the maxillomandibular complex.

Journal of dental research·2009
Same author

SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition.

Nucleic acids research·2004
Same author

[Bank of samples from the Prof_Pat protein family, assessment of efficacy].

Molekuliarnaia biologiia·2004
Same author

[mRNA-FAST (mRNA-Function, Activity, STructure) computer system].

Molekuliarnaia biologiia·2002
Same author

[Properties of artificial evolution of proteins and peptides].

Molekuliarnaia biologiia·2002
Same journal

DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment.

Computer applications in the biosciences : CABIOS·1998
Same journal

Two applications to facilitate the viewing of database search result files on the Macintosh.

Computer applications in the biosciences : CABIOS·1998
Same journal

BioWish: a molecular biology command extension to Tcl/Tk.

Computer applications in the biosciences : CABIOS·1998
Same journal

The Sequence Alerting Server--a new WEB server.

Computer applications in the biosciences : CABIOS·1998
Same journal

A software tool for the analysis of mass spectrometric disulfide mapping experiments.

Computer applications in the biosciences : CABIOS·1998
Same journal

SAMBA: hardware accelerator for biological sequence comparison.

Computer applications in the biosciences : CABIOS·1998
See all related articles

This study introduces an object-oriented data handler for molecular genetics software, simplifying sequence analysis. The flexible system supports common data types and aids in visualizing multiple files for comprehensive genetic data interpretation.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Molecular Genetics

Background:

  • Development of molecular genetics application software requires robust data handling capabilities.
  • Existing tools may lack flexibility for diverse sequence analysis needs.
  • Efficient visualization of multi-file genetic data is crucial for comprehensive analysis.

Purpose of the Study:

  • To introduce a novel object-oriented data handler for molecular genetics applications.
  • To provide supplementary tools for enhanced sequence analysis software development.
  • To facilitate the integration and visualization of diverse molecular genetic data types.

Main Methods:

  • Implementation of an object-oriented data handler with a flexible and expandable format.
  • Development of an object library supporting common molecular genetic data types.

Related Experiment Videos

  • Inclusion of a format-converting program and a multi-file data viewer.

    • Main Results:

    • The data handler successfully supports common molecular genetic data types.
    • New data types can be constructed using an object-oriented approach.
    • The integrated viewer allows simultaneous visualization of data from multiple files, aiding in constructing a holistic data picture.

    Conclusions:

    • The developed object-oriented data handler provides a flexible and expandable solution for molecular genetics software.
    • The supplementary tools enhance the development process for sequence analysis applications.
    • The software, implemented on IBM PC-compatible computers, facilitates comprehensive genetic data interpretation through integrated visualization.