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Updated: Aug 12, 2026

Sequencing of Bacterial Microflora in Peripheral Blood: our Experience with HIV-infected Patients
Published on: June 11, 2011
Recently recognised microbial enteropathies and HIV infection
M J Farthing1, M P Kelly, A M Veitch
1Digestive Diseases Research Centre, Medical College of St Bartholomew's Hospital, London, UK.
Abstract:
Persistent diarrhoea and small bowel enteropathy are important features of HIV infection. At least 80% of cases of persistent diarrhoea in patients with HIV/AIDS can be attributed to a specific enteropathogen. The coccidian parasites Cryptosporidium parvum, Isospora belli and Cyclospora and the Microsporidia account for at least 50% of cases of persistent diarrhoea in the industrialised and developing world with major contributions from Mycobacterium avium complex and other bacteria and cytomeglovirus. The intracellular protozoa can be detected on faecal microscopy although confirmation may be required by intestinal mucosal biopsies. Although up to 20% of cases of persistent diarrhoea can not be attributed to a specific infection, the question as to whether HIV infection itself can produce enteropathy remains uncertain. Recent developments in the treatment of persistent diarrhoea in HIV include the use of albendazole for microsporidial diarrhoea and co-trimoxazole for the treatment and eradication of Cyclospora.
Insights
Persistent diarrhea in HIV/AIDS patients is often caused by specific pathogens like coccidia and microsporidia. Early detection via microscopy and biopsy, along with targeted treatments like albendazole and co-trimoxazole, are crucial for managing this condition.
Area of Science:
- Gastroenterology
- Infectious Diseases
- Virology
Background:
- Persistent diarrhea and small bowel enteropathy are significant complications of Human Immunodeficiency Virus (HIV) infection.
- A specific enteropathogen can be identified in at least 80% of persistent diarrhea cases among HIV/AIDS patients.
- Coccidian parasites (Cryptosporidium parvum, Isospora belli, Cyclospora) and Microsporidia are major contributors, alongside Mycobacterium avium complex, bacteria, and cytomegalovirus.
Purpose of the Study:
- To review the causes and diagnostic approaches for persistent diarrhea in HIV infection.
- To highlight recent therapeutic advancements for specific enteropathogens causing diarrhea in HIV/AIDS.
- To address the uncertainty regarding HIV's direct role in causing enteropathy.
Main Methods:
- Review of existing literature on persistent diarrhea in HIV/AIDS.
- Discussion of diagnostic methods including fecal microscopy and intestinal mucosal biopsies.
- Analysis of treatment strategies for identified enteropathogens.
Main Results:
- Intracellular protozoa (coccidia, microsporidia) account for over 50% of persistent diarrhea cases.
- Diagnosis can be confirmed by fecal microscopy, though intestinal biopsies may be necessary.
- Up to 20% of cases remain without a specific identified infection, leaving the direct role of HIV in enteropathy unclear.
Conclusions:
- Specific enteropathogens are frequently responsible for persistent diarrhea in HIV/AIDS.
- Albendazole and co-trimoxazole are effective treatments for microsporidial and Cyclospora infections, respectively.
- Further research is needed to clarify the direct impact of HIV infection on enteropathy.
Related Concept Videos
Fungal Phylum Microsporidia
Introduction to the Human Microbiota
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Amebiasis

