Related Experiment Videos

Fluorescence studies of lipid association-induced conformational adaptations of an exchangeable amphipathic

V Narayanaswami1, A Frolov, F Schroeder

  • 1Lipid and Lipoprotein Research Group, University of Alberta, Edmonton, Canada.

Insights

Manduca sexta apolipophorin III (apoLp-III) undergoes conformational changes upon lipid binding. Spectroscopic analysis of Tyr145 reveals a quenching mechanism in the lipid-free state, which is relieved upon lipid interaction, indicating structural flexibility.

Area of Science:

  • Biochemistry
  • Structural Biology
  • Spectroscopy

Background:

  • Manduca sexta apolipophorin III (apoLp-III) is a lipid-binding protein with a known five-helix bundle structure.
  • Its conformational adaptability is crucial for lipid transport.
  • Previous studies suggest apoLp-III undergoes structural changes upon interacting with lipid surfaces.

Purpose of the Study:

  • To characterize the spectroscopic properties of Tyr145 in apoLp-III.
  • To utilize Tyr145 as a probe for lipid-induced conformational changes.
  • To elucidate the mechanism of fluorescence quenching and its relation to protein structure.

Main Methods:

  • UV-spectrophotometry to determine pKa.
  • Fluorescence spectroscopy to measure quantum yield and lifetimes.
  • Time-resolved fluorescence decay analysis.
  • Differential polarized phase and modulation fluorometry.

Main Results:

  • The pKa of Tyr145 was determined to be 10.5, indicating it is not ionized at physiological pH.
  • A red shift in absorbance and fluorescence quenching of Tyr145 was observed in the lipid-free state, attributed to H-bonding.
  • Quantum yield increased fivefold upon pH decrease (pKa ~5.5) and remained unaltered upon lipid binding.
  • Time-resolved fluorescence showed nonexponential decay with two components (3.3 ns and 0.89 ns).
  • Lipid interaction altered the segmental motion of Tyr145.

Conclusions:

  • Tyr145 fluorescence quenching in lipid-free apoLp-III is due to an intramolecular H-bonding interaction.
  • This quenching is relieved upon lipid binding, consistent with helix bundle opening.
  • Tyr145 serves as an effective spectroscopic probe for monitoring apoLp-III structural flexibility and conformational changes.
  • The altered motional properties of Tyr145 upon lipid interaction further support its utility as a structural probe.

Related Concept Videos