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Generation of Genomic Deletions in Mammalian Cell Lines via CRISPR/Cas9
Published on: January 3, 2015
An 80 Kb P1 clone from chromosome 3p21.3 suppresses tumor growth in vivo
M C Todd1, R H Xiang, D K Garcia
1Department of Cellular and Structural Biology, The University of Health Science Center, San Antonio, Texas 78284-7762, USA.
Abstract:
High frequencies of allelic loss on the short arm of chromosome 3 in small cell lung cancer (SCLC) and a number of other tumors suggest the existence of a tumor suppressor gene(s) within the deleted regions. Two small cell lung cancer lines, NCI H740 and GLC20, have been described which have homozygous deletions in the region 3p21.3. The deleted region overlaps with a 2 Mb fragment of human DNA present in the interspecies hybrid HA(3)BB9F, that suppresses tumor formation by mouse A9 fibrosarcoma cells. Human sequences from this cell hybrid were isolated using inter Alu PCR. From this starting point, a P1 contig was developed for the region of 450 Kb that is common to the homozygous deletions seen in the SCLC lines NCI H740 and GLC20 and is also present in HA(3)BB9F, the suppressed A9 hybrid. Individual P1 clones were assayed for their ability to suppress the tumorigenicity of the mouse fibrosarcoma cell line A9 as assayed by injection of transfected A9 cells into athymic nude mice. The introduction of one of the P1 clones into A9 cells resulted in suppression of tumor growth whereas two other P1 clones from the contig failed to suppress tumor formation in athymic nude mice. These data functionally delimit a tumor suppressor locus to a region of 80 kb within a P1 clone at 3p21.3.
Insights
Tumor suppressor genes on chromosome 3p are implicated in small cell lung cancer (SCLC). Researchers identified an 80 kb region within a specific P1 clone that suppresses tumor growth in mouse models.
Area of Science:
- Genetics
- Oncology
- Molecular Biology
Background:
- Allelic loss on chromosome 3p is frequent in small cell lung cancer (SCLC) and other tumors, suggesting tumor suppressor genes in these regions.
- Specific SCLC cell lines (NCI H740, GLC20) exhibit homozygous deletions at 3p21.3, overlapping with a tumor-suppressive DNA fragment in a hybrid cell line (HA(3)BB9F).
Purpose of the Study:
- To identify and functionally characterize tumor suppressor genes within the commonly deleted 3p21.3 region in SCLC.
- To narrow down the location of a potential tumor suppressor locus responsible for suppressing tumorigenicity.
Main Methods:
- Isolation of human DNA sequences from the tumor-suppressive hybrid cell line HA(3)BB9F using inter Alu PCR.
- Development of a 450 Kb P1 contig common to SCLC deletions and the hybrid DNA.
- Functional assay of individual P1 clones for tumor suppressor activity by transfecting mouse fibrosarcoma cells (A9) and evaluating tumorigenicity in nude mice.
Main Results:
- A 450 Kb P1 contig was constructed, representing the overlapping region of homozygous deletions in SCLC lines and the tumor-suppressive hybrid.
- One P1 clone, when introduced into A9 cells, successfully suppressed tumor formation in athymic nude mice.
- Two other P1 clones from the same contig did not exhibit tumor suppressive activity.
Conclusions:
- The study functionally delimits a tumor suppressor locus to an 80 kb region within a specific P1 clone at chromosome 3p21.3.
- This finding provides a refined target for further investigation into SCLC pathogenesis and potential therapeutic strategies.
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