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Updated: Aug 7, 2026

Genome-wide Mapping of Drug-DNA Interactions in Cells with COSMIC (Crosslinking of Small Molecules to Isolate Chromatin)
Published on: January 20, 2016
Synthesis and biological activity of DNA damaging agents that form decoy binding sites for the estrogen receptor
S M Rink1, K J Yarema, M S Solomon
1Department of Chemistry, Massachusetts Institute of Technology, Cambridge 02139, USA.
Abstract:
It is a goal of cancer chemotherapy to achieve the selective killing of tumor cells while minimizing toxicity to normal tissues. We describe the design of selective toxins forming DNA adducts that attract the estrogen receptor (ER), a transcription factor that is overexpressed in many human breast and ovarian tumors. The compounds consist of 4-(3-aminopropyl)-N,N-(2-chloroethyl)-aniline linked to 2-(4'-hydroxyphenyl)-3-methyl-5-hydroxy-indole. The former moiety is a DNA damaging nitrogen mustard and the latter is a ligand for the ER. The connection between these groups was refined to permit DNA adducts formed by the mustard portion of the molecule to present the ligand domain so that it was able to interact efficiently with the ER. By using 16-mers containing specific DNA adducts, it was determined that monoadducts and putative intrastrand crosslinks were preferred targets for the ER over interstrand crosslinks. A series of structurally related 2-phenylindole mustards was prepared, some of which were selectively toxic to the ER-positive breast cancer cell line MCF-7, as compared with the ER(-) negative line MDA-MB231. The ability both to bind to DNA and to interact significantly with the ER were essential to achieve selective lethality toward ER(+) cells. Compounds forming DNA adducts without the ability to bind receptor showed similar toxicities in the two cell lines. Several models could explain the selective toxicity of the mustard-phenylindole compounds toward ER(+) cells. The favored model suggests that a mustard-DNA adduct is shielded by the ER from DNA repair enzymes and hence cells possessing an abundance of the ER selectively retain the adduct and are killed.
Insights
Researchers designed novel toxins targeting cancer cells by linking DNA-damaging agents to estrogen receptor (ER) ligands. This strategy selectively killed ER-positive breast cancer cells, offering a promising approach for targeted cancer chemotherapy.
Area of Science:
- Medicinal Chemistry
- Molecular Biology
- Oncology
Background:
- Cancer chemotherapy aims to selectively kill tumor cells while sparing normal tissues.
- Estrogen receptor (ER) is overexpressed in many human breast and ovarian tumors.
- Targeted drug delivery can enhance efficacy and reduce side effects.
Purpose of the Study:
- To design and synthesize novel compounds that selectively target ER-positive cancer cells.
- To investigate the mechanism of selective toxicity of these compounds.
- To evaluate the potential of ER-targeted DNA adducts in cancer therapy.
Main Methods:
- Synthesis of novel nitrogen mustard compounds linked to ER-binding phenylindole ligands.
- Characterization of DNA adduct formation and ER binding affinities.
- In vitro cytotoxicity assays using ER-positive (MCF-7) and ER-negative (MDA-MB231) cancer cell lines.
Main Results:
- Compounds selectively killed ER-positive breast cancer cells compared to ER-negative cells.
- ER binding and DNA adduct formation were crucial for selective toxicity.
- ER-positive cells showed selective retention of DNA adducts, suggesting a role for ER in shielding adducts from repair.
Conclusions:
- Novel ER-targeted DNA-damaging agents demonstrate selective toxicity towards ER-positive cancer cells.
- The mechanism involves ER shielding of DNA adducts from repair enzymes.
- These findings support the development of ER-targeted therapies for breast and ovarian cancers.
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