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Related Experiment Videos

viwish: a visualization server for protein modelling and docking

T Klein1, F Ackermann, S Posch

  • 1Applied Computer Science, Bielefeld University, Germany.

Gene
|December 12, 1996
PubMed
Summary
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A new visualization tool, viwish, allows users to display multiple proteins in various windows. This user-friendly system is ideal for developing algorithms requiring visual data, and it is freely distributed with source code.

Area of Science:

  • Molecular biology
  • Computational chemistry
  • Biophysics

Background:

  • Developing effective visualization tools is crucial for understanding complex molecular structures.
  • Existing tools may lack flexibility or ease of use for certain applications.
  • The Tcl command language offers a powerful scripting foundation for graphical applications.

Purpose of the Study:

  • To introduce viwish, a novel, menu-driven visualization tool for proteins.
  • To provide a flexible platform for displaying and analyzing molecular data.
  • To facilitate the development of algorithms that benefit from visual feedback.

Main Methods:

  • Developed using the Tcl command language and Tk extension.
  • Implemented a completely menu-driven interface for ease of use.

Related Experiment Videos

  • Enabled communication across different machines for distributed applications.

    • Main Results:

    • The viwish system can display an arbitrary number of proteins in multiple windows.
    • It supports customization of menus, configurations, and windows.
    • It can visualize diverse chemical data, including molecular surfaces and 3D gridded features.

    Conclusions:

    • The viwish tool offers an intuitive and powerful solution for protein visualization.
    • Its flexibility makes it suitable as a standalone package or a graphics server.
    • Free distribution with source code promotes wider adoption and development.