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Reverse Yeast Two-hybrid System to Identify Mammalian Nuclear Receptor Residues that Interact with Ligands and/or Antagonists
Published on: November 15, 2013
Structure and function of steroid dehydrogenases involved in hypertension, fertility, and cancer
Abstract:
Short-chain dehydrogenase reductase (SDR) enzymes influence mammalian reproduction, hypertension, neoplasia, and digestion. The three-dimensional structures of two members of the SDR family reveal the position of the conserved catalytic triad, a possible mechanism of keto-hydroxyl interconversion, the molecular mechanism of inhibition, and the basis for selectivity. Glycyrrhizic acid, the active ingredient in licorice, and its metabolite carbenoxolone are potent inhibitors of bacterial 3 alpha, 20 beta-hydroxysteroid dehydrogenase (3 alpha, 20 beta-HSD). The three-dimensional structure of the 3 alpha,20 beta-HSD carbenoxolone complex unequivocally verifies the postulated active site of the enzyme, shows that inhibition is a result of direct competition with the substrate for binding, and provides a plausible model for the mechanism of inhibition of 11 beta-hydroxysteroid dehydrogenase and 15-hydroxyprostaglandin dehydrogenase by carbenoxolone. The structure of human 17 beta-hydroxysteroid dehydrogenase type 1 (17 beta-HSD) suggests the details of binding of estrone and 17 beta-estradiol in the active site of the enzyme and the possible roles of various amino acids in the catalytic cleft. The SDR family includes over 50 proteins from human, mammalian, insect, and bacterial sources. Only five residues are conserved in all members of the family, including the YXXXK sequence. X-ray crystal structures of five members of the family have been completed. When the alpha-carbon backbone of the cofactor binding domains of the five structures are superimposed, the conserved residues are at the core of the structure and in the cofactor binding domain, but not in the substrate binding pocket.
Insights
Short-chain dehydrogenase reductase (SDR) enzymes are crucial for various biological processes. Structural studies reveal conserved catalytic triads and inhibition mechanisms, offering insights into enzyme function and drug development.
Area of Science:
- Biochemistry and Structural Biology
- Enzymology
- Molecular Biology
Background:
- Short-chain dehydrogenase reductase (SDR) enzymes play vital roles in mammalian reproduction, hypertension, neoplasia, and digestion.
- Understanding the three-dimensional structures of SDR enzymes is key to elucidating their catalytic mechanisms and inhibition strategies.
Purpose of the Study:
- To determine the three-dimensional structures of SDR enzymes and their complexes with inhibitors.
- To investigate the molecular mechanisms of enzyme inhibition and substrate binding.
- To identify conserved residues and structural features within the SDR family.
Main Methods:
- X-ray crystallography was employed to determine the structures of five SDR family members.
- Complex structures, such as 3 alpha,20 beta-hydroxysteroid dehydrogenase (3 alpha,20 beta-HSD) with carbenoxolone, were analyzed.
- Superposition of alpha-carbon backbones of cofactor binding domains provided insights into conserved residues.
Main Results:
- Structural analysis revealed the conserved catalytic triad, keto-hydroxyl interconversion mechanisms, and basis for selectivity.
- Carbenoxolone was identified as a potent inhibitor of bacterial 3 alpha,20 beta-HSD, acting via competitive substrate binding.
- Conserved residues, including the YXXXK sequence, are located in the core and cofactor binding domain, not the substrate pocket.
Conclusions:
- The study provides detailed structural insights into SDR enzyme function, substrate binding, and inhibition mechanisms.
- Structural data for 3 alpha,20 beta-HSD and 17 beta-hydroxysteroid dehydrogenase type 1 (17 beta-HSD) offer models for related enzymes.
- Understanding conserved structural elements aids in predicting the function and designing inhibitors for the broader SDR family.
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