Related Experiment Video
Updated: Aug 9, 2026

Electrophoretic Mobility Shift Assay (EMSA) for the Study of RNA-Protein Interactions: The IRE/IRP Example
Published on: December 3, 2014
Structure and function of the iron-responsive element from human ferritin L chain mRNA
W Mikulits1, T Sauer, A A Infante
1Institute of Molecular Biology, Vienna Biocenter, University of Vienna, Austria.
Researchers characterized the iron-responsive element (IRE) in human ferritin light chain mRNA. This IRE effectively binds iron regulatory protein (IRP), regulating translation during iron changes.
Area of Science:
- Molecular Biology
- Gene Regulation
- Iron Metabolism
Background:
- Ferritin regulates intracellular iron levels.
- Iron-responsive elements (IREs) control ferritin mRNA translation.
- Human ferritin exists in heavy (H) and light (L) subunits.
Purpose of the Study:
- To clone and functionally characterize the IRE of human ferritin L chain mRNA.
- To compare the L-chain IRE structure and function to the H-chain IRE.
- To investigate the role of the L-chain IRE in iron regulation in T lymphocytes.
Main Methods:
- Cloning of the human ferritin L chain IRE from a T lymphocyte cDNA library.
- In vitro binding assays with iron regulatory protein (IRP).
- In vivo studies assessing mRNA translation and polysome mobilization under varying iron conditions.
Main Results:
- The cloned L chain IRE exhibited a distinct palindromic cDNA structure compared to genomic predictions.
- The L chain IRE formed a less stable stem-loop than the H chain IRE.
- Despite structural differences, the L chain IRE efficiently bound IRP in vitro, similar to the H chain IRE.
- In vivo, the L chain IRE repressed translation during iron deprivation and allowed transcript mobilization upon iron repletion.
Conclusions:
- The human ferritin L chain mRNA contains a functional IRE that regulates translation.
- The L chain IRE mediates iron-dependent translational control comparable to the H chain IRE.
- These findings contribute to understanding iron homeostasis regulation at the post-transcriptional level.
Related Concept Videos
Regulated mRNA Transport
The Early Endosome: Endocytosis of Transferrin
Regulation of the Unfolded Protein Response
General Transcription Factors
Regulated mRNA Transport
Transcriptional Regulation: Riboswitches

