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Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
Published on: September 20, 2018
Structure-function analysis of Msx2-mediated transcriptional suppression
E P Newberry1, T Latifi, J T Battaile
1Department of Medicine, Washington University School of Medicine, St. Louis, Missouri 63110, USA.
Abstract:
Osteocalcin (OC) is a calcium binding protein expressed in mature osteoblasts undergoing mineralization. The OC gene has been identified as a target for transcriptional suppression by Msx2, a homeodomain transcription factor that controls ossification in calvarial bone of the developing skull. We have initiated systematic structure-function analyses of Msx2, using OC promoter suppression (luciferase reporter) in MC3T3-E1 calvarial osteoblasts as an assay. Msx2 variants were epitope ("FLAG")-tagged for monitoring Msx2 protein expression by Western blot analysis. Functional analyses of N- and C-terminally truncated molecules identify Msx2 residues 97-208 as the core suppressor domain. Internal deletion analyses indicate that suppressor function is dependent upon structural features encoded by residues 132-148--upstream of the homeodomain and overlapping the homeodomain N-terminal extension--but not upon residues in the three homeodomain helices. Mutations that enhance DNA binding activity do not proportionally enhance Msx2 suppressor function; moreover, a Msx2 point mutant Msx2(T147A) that completely lacks DNA binding activity is indistinguishable from wild-type Msx2 in its ability to suppress the OC promoter, demonstrating that direct interaction with DNA is not required for Msx2 suppressor function. This suggests that Msx2 suppresses transcription via protein-protein interactions with components of the basal transcriptional machinery, either alone or in concert with co-regulators. Using interaction "Far Western" blotting assays, we systematically tested for protein-protein interactions between Msx2 and components of the basal transcriptional machinery known to mediate transcriptional activation (TBP, TFIIB, and TFIIF). Msx2 binds both components of TFIIF (RAP74, RAP30), but not TFIIB or TBP. Msx2(55-208) encompasses core suppressor domain residues and binds TFIIF; in this context, deletion of the seventeen amino acid residues 132-148 that are required for core suppressor function abrogates interactions with TFIIF components. Co-expression of RAP74 in MC3T3-E1 cells partially reverses (>50%) suppression of OC promoter activity by Msx2, while co-expression of TFIIB or RAP30 has no effect. Thus the core suppressor domain of Msx2 participates in functionally important interactions with RAP74 that regulate OC promoter activity in calvarial osteoblasts.
Insights
Msx2 suppresses osteocalcin gene transcription through protein interactions, not direct DNA binding. A core domain (residues 132-148) is crucial for binding TFIIF, specifically RAP74, to regulate calvarial osteoblast activity.
Area of Science:
- Molecular Biology
- Genetics
- Developmental Biology
Background:
- Osteocalcin (OC) is a key protein in bone mineralization, regulated by the Msx2 transcription factor.
- Msx2 controls ossification in the developing skull and is known to suppress OC gene expression.
Purpose of the Study:
- To systematically analyze the structure-function relationship of Msx2 in regulating osteocalcin (OC) gene transcription.
- To identify the specific domains and mechanisms by which Msx2 suppresses OC promoter activity in calvarial osteoblasts.
Main Methods:
- Utilized luciferase reporter assays in MC3T3-E1 cells to measure OC promoter suppression by Msx2 variants.
- Employed Western blot analysis for Msx2 protein expression and Far Western blotting to assess protein-protein interactions.
- Generated N- and C-terminal truncations and internal deletions of Msx2 to map functional domains.
Main Results:
- Msx2 residues 97-208 constitute the core suppressor domain, with residues 132-148 being critical for this function.
- Msx2 suppressor activity is independent of direct DNA binding; a mutant lacking DNA binding (Msx2(T147A)) retained full suppressor function.
- Msx2 directly interacts with TFIIF components RAP74 and RAP30, but not TBP or TFIIB. The critical residues 132-148 are essential for TFIIF binding.
- Co-expression of RAP74 partially reversed Msx2-mediated OC promoter suppression, indicating a functional interaction.
Conclusions:
- Msx2 suppresses osteocalcin gene transcription primarily through protein-protein interactions with the basal transcription machinery, specifically TFIIF (RAP74).
- Direct DNA binding is not required for Msx2's transcriptional suppressor function.
- The identified core suppressor domain (residues 132-148) plays a vital role in mediating these interactions and regulating OC gene activity in calvarial osteoblasts.
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