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Updated: Aug 9, 2026

Production of Disulfide-stabilized Transmembrane Peptide Complexes for Structural Studies
Published on: March 6, 2013
The crystal structure of domain 1 of receptor protein-tyrosine phosphatase mu
K M Hoffmann1, N K Tonks, D Barford
1Laboratory of Molecular Biophysics, University of Oxford, Rex Richards Building, South Parks Road, Oxford OX1 3QU, United Kingdom.
Abstract:
Receptor-like protein-tyrosine phosphatases (RPTPs) play important roles in regulating intracellular processes. We have been investigating the regulation and function of RPTPmu, a receptor-like PTP related to the Ig superfamily of cell adhesion molecules. Recently, the crystal structure of a dimer of the membrane proximal domain of RPTPalpha (RPTPalpha D1) was described (Bilwes, A. M., den Hertog, J., Hunter, T., and Noel J. P. (1996) Nature 382, 555-559). Within this crystal structure, the catalytic site of each subunit of the dimer is sterically blocked by the insertion of the N-terminal helix-turn-helix segment of the dyad-related monomer. It was proposed that dimerization would lead to inhibition of catalytic activity and may provide a paradigm for the regulation of the RPTP family. We have determined the crystal structure, to 2.3 A resolution, of RPTPmu D1, which shares 46% sequence identity with that of RPTPalpha D1. Although the tertiary structures of RPTPalpha D1 and RPTPmu D1 are very similar, with a root mean square deviation between equivalent Calpha atoms of 1.1 A, the quaternary structures of these two proteins are different. Neither the catalytic site nor the N-terminal helix-turn-helix segment of RPTPmu D1 participates in protein-protein interactions. The catalytic site of RPTPmu D1 is unhindered and adopts an open conformation similar to that of the cytosolic PTP, PTP1B (Barford, D., Flint, A. J., and Tonks, N. K. (1994) Science 263, 1397-1404). We propose that dimerization-induced modulation of RPTP activity may not be a general feature of this family of enzymes.
Insights
Receptor-like protein-tyrosine phosphatases (RPTPs) are crucial for cell processes. Structural analysis of RPTPmu reveals its catalytic site is unhindered, differing from RPTPalpha and suggesting varied regulation in the RPTP family.
Area of Science:
- Biochemistry
- Structural Biology
- Cell Signaling
Background:
- Receptor-like protein-tyrosine phosphatases (RPTPs) are key regulators of intracellular signaling pathways.
- RPTPmu, related to Ig superfamily cell adhesion molecules, is under investigation for its regulatory mechanisms.
- Previous studies on RPTPalpha suggested dimerization inhibits catalytic activity, potentially a common regulatory paradigm for RPTPs.
Purpose of the Study:
- To determine the crystal structure of the membrane proximal domain of RPTPmu (RPTPmu D1).
- To compare the quaternary structure of RPTPmu D1 with RPTPalpha D1.
- To elucidate the regulatory mechanisms of RPTPmu and assess the generality of dimerization-induced inhibition in RPTPs.
Main Methods:
- X-ray crystallography to determine the 2.3 Å resolution structure of RPTPmu D1.
- Structural comparison of RPTPmu D1 and RPTPalpha D1, including tertiary and quaternary structures.
- Analysis of protein-protein interactions and catalytic site accessibility in RPTPmu D1.
Main Results:
- The crystal structure of RPTPmu D1 was determined at 2.3 Å resolution.
- RPTPmu D1 shares high tertiary structural similarity with RPTPalpha D1 but exhibits distinct quaternary structures.
- Unlike RPTPalpha D1, RPTPmu D1's catalytic site and N-terminal segment are not involved in protein-protein interactions, remaining unhindered and open.
Conclusions:
- Dimerization-induced inhibition of catalytic activity may not be a universal regulatory mechanism for all RPTPs.
- RPTPmu exhibits a unique structural arrangement potentially leading to different regulatory pathways compared to RPTPalpha.
- Further research is needed to fully understand the diverse regulatory strategies within the RPTP family.
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