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Updated: Aug 9, 2026

Enhanced Crosslinking Immunoprecipitation (eCLIP) Method for Efficient Identification of Protein-bound RNA in Mouse Testis
Published on: May 10, 2019
Separate elements in the 3' untranslated region of the mouse protamine 1 mRNA regulate translational repression and
M A Fajardo1, H S Haugen, C H Clegg
1Department of Genetics, University of Washington, Seattle, Washington 98195, USA.
Abstract:
The mouse protamine mRNAs, Prm-1 and Prm-2, are translationally repressed for several days during male germ cell differentiation. The translational delay of mouse Prm-1 mRNA has previously been shown to be dependent upon cis-acting elements that reside in the last 62 nucleotides of the Prm-1 3' untranslated region (3' UTR). We have previously identified a 48/50-kDa protein that binds the 3' UTRs of both Prm-1 and Prm-2 mRNAs in a sequence-specific manner, is present in cytoplasmic fractions of postmeiotic round spermatids where the protamine mRNAs are translationally silent, and is markedly reduced in elongated spermatids where the protamine mRNAs become activated for translation. Surprisingly, the binding site for this activity maps to a region of the Prm-1 3' UTR not contained within the functional 62 nucleotides described above. In this report we show that the binding site for the 48/50-kDa protein can also delay translation of a reporter RNA in vivo, suggesting that the 48/50-kDa protein can repress the translation of Prm-1 mRNA during murine spermatogenesis. This observation proves that two separate regions of the Prm-1 3' UTR are sufficient to repress Prm-1 translation. In addition, immunocytochemistry and polysome analysis have revealed that this transgenic reporter mRNA fails to undergo proper translational activation. These results suggest that an additional region of the Prm-1 3' UTR is required for proper translational activation and that Prm-1 translational repression elements can be separated from those involved in translational activation.
Insights
Mouse protamine mRNAs (Prm-1 and Prm-2) are translationally repressed during male germ cell differentiation. A specific protein binds Prm-1 mRNA
Area of Science:
- Molecular Biology
- Reproductive Biology
- Gene Regulation
Background:
- Protamine mRNAs (Prm-1 and Prm-2) are translationally repressed during male germ cell differentiation.
- The 3' untranslated region (UTR) of Prm-1 mRNA contains cis-acting elements responsible for translational delay.
- A 48/50-kDa protein binds Prm-1 and Prm-2 3' UTRs, present when protamine mRNAs are silent.
Purpose of the Study:
- To investigate the role of a 48/50-kDa protein in Prm-1 mRNA translational repression.
- To determine if the binding site for the 48/50-kDa protein can repress translation in vivo.
- To identify regions of Prm-1 3' UTR involved in translational activation.
Main Methods:
- In vivo reporter RNA translation assays.
- Immunocytochemistry.
- Polysome analysis.
Main Results:
- The binding site for the 48/50-kDa protein delayed reporter RNA translation in vivo.
- Two separate regions of the Prm-1 3' UTR were sufficient for translational repression.
- Transgenic reporter mRNA failed proper translational activation, indicating a requirement for an additional Prm-1 3' UTR region.
Conclusions:
- The 48/50-kDa protein represses Prm-1 mRNA translation during murine spermatogenesis.
- Prm-1 translational repression elements are separable from those involved in translational activation.
- Distinct regions of the Prm-1 3' UTR regulate translational repression and activation.
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