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Crystallization and preliminary X-ray analysis of human D-dopachrome tautomerase
H Sugimoto1, M Taniguchi, A Nakagawa
1Division of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo, Japan.
Abstract:
D-Dopachrome tautomerase catalyzes the conversion of D-dopachrome to 5,6-dihydroxyindole. This protein has amino acid sequence homology with that of macrophage migration inhibitory factor (MIF), suggesting a pathophysiological role of this protein in inflammatory and immunological events. We previously determined the tertiary structure of MIF and revealed the functional and evolutional relationships of this protein to isomerase. However, the reaction mechanism of both proteins associated with the inflammatory response, immune system, or tautomerase activities in vitro have not yet been clarified. The tertiary structure of D-dopachrome tautomerase would provide insight into the molecular function and the mechanism of these proteins. In this study, we crystallized human D-dopachrome tautomerase by a hanging-drop vapor diffusion method. The crystals belong to the trigonal space group P3, with unit cell dimensions a = b = 84.2 A and c = 41.0 A. They contain three (or two) monomers in the asymmetric unit, corresponding to a VM value of 2.21 (or 3.32) A3 Da-1. The best crystals diffract X-ray to 1.6 A resolution using a synchrotron radiation source. Crystallization of the selenomethionyl derivative of the protein for applying the multiwavelength anomalous diffraction method was also successful.
Insights
D-dopachrome tautomerase, structurally similar to macrophage migration inhibitory factor (MIF), has been crystallized. This structural insight aids in understanding its role in inflammation and immune responses.
Area of Science:
- Biochemistry
- Structural Biology
- Immunology
Background:
- D-dopachrome tautomerase converts D-dopachrome to 5,6-dihydroxyindole.
- Homology to macrophage migration inhibitory factor (MIF) suggests roles in inflammation and immunity.
- The reaction mechanisms of D-dopachrome tautomerase and MIF remain unclear.
Purpose of the Study:
- To determine the tertiary structure of human D-dopachrome tautomerase.
- To provide insights into the molecular function and reaction mechanisms of D-dopachrome tautomerase and related proteins.
- To facilitate further studies on the roles of these proteins in biological processes.
Main Methods:
- Crystallization of human D-dopachrome tautomerase using the hanging-drop vapor diffusion method.
- X-ray diffraction analysis of crystals to 1.6 A resolution using synchrotron radiation.
- Successful crystallization of a selenomethionyl derivative for multiwavelength anomalous diffraction (MAD) studies.
Main Results:
- Human D-dopachrome tautomerase was crystallized in the trigonal space group P3.
- Unit cell dimensions were determined as a = b = 84.2 A and c = 41.0 A.
- Crystals diffracted X-rays to a resolution of 1.6 A.
Conclusions:
- The crystal structure of D-dopachrome tautomerase provides a foundation for understanding its enzymatic activity.
- Structural data will aid in elucidating the protein's function in inflammatory and immunological pathways.
- Further structural and functional studies are warranted to fully understand its biological significance.
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