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Confocal Imaging of Double-Stranded RNA and Pattern Recognition Receptors in Negative-Sense RNA Virus Infection
Published on: January 26, 2019
Virus-like, double-stranded RNAs in the parasitic protozoan Cryptosporidium parvum
N V Khramtsov1, K M Woods, M V Nesterenko
1Division of Biology, Kansas State University, Manhattan 66506, USA. podolsk@ksu.edu
Abstract:
We have discovered and analysed two novel, linear extrachromosomal double-stranded RNAs (dsRNAs) within oocysts of major north Amercian isolates of Cryptosporidium parvum, a parasitic protozoan that infects the gastrointestinal tract of a variety of mammals, including humans. These dsRNAs were found to reside within the cytoplasm of sporozoites, and were not detected in other species of the genus. cDNAs representing both dsRNA genomes were cloned and sequenced, 1786 and 1374 nt, and each encoded one large open reading frame (ORF). The deduced protein sequence of the larger dsRNA (L-dsRNA) had homology with viral RNA-dependent RNA polymerases (RDRP), with more similarity to polymerases from fungi than those from other protozoa. The deduced protein sequence from the smaller dsRNA (S-dsRNA) had limited similarity with mitogen-activated c-June NH2 terminal protein kinases (JNK) from mammalian cells. Attempts to visually identify or purify virus-like particles associated with the dsRNAs were unsuccessful. Sensitivity of the dsRNAs to RNase A also suggests that the dsRNAs may be unencapsidated. A RDRP activity was identified in crude extracts from C. parvum sporozoites and products of RNA polymerase activity derived in vitro were similar to the dsRNAs purified directly from the parasites.
Insights
Novel double-stranded RNAs (dsRNAs) were discovered in Cryptosporidium parvum. These dsRNAs encode proteins similar to viral RNA-dependent RNA polymerases and may be involved in parasite biology.
Area of Science:
- Parasitology
- Virology
- Molecular Biology
Background:
- Cryptosporidium parvum is a significant protozoan parasite causing gastrointestinal illness.
- Extrachromosomal genetic elements in parasites are not well understood.
Purpose of the Study:
- To identify and characterize novel genetic materials within Cryptosporidium parvum.
- To investigate the potential origin and function of these elements.
Main Methods:
- Isolation and sequencing of double-stranded RNAs (dsRNAs) from C. parvum oocysts.
- Bioinformatic analysis of dsRNA sequences and encoded proteins.
- Detection of RNA-dependent RNA polymerase (RDRP) activity in parasite extracts.
Main Results:
- Two novel linear extrachromosomal dsRNAs were identified in North American C. parvum isolates.
- The larger dsRNA (L-dsRNA) encodes a protein with homology to viral RDRPs, particularly fungal polymerases.
- The smaller dsRNA (S-dsRNA) encodes a protein with limited similarity to mammalian JNK.
- RDRP activity was detected in C. parvum sporozoite extracts, producing products similar to the purified dsRNAs.
- dsRNAs were sensitive to RNase A, suggesting they may be unencapsidated.
Conclusions:
- The discovered dsRNAs represent a novel finding in Cryptosporidium parvum.
- The presence of RDRP-like sequences suggests a potential viral or self-replicating RNA origin.
- These dsRNAs may play a role in the biology or pathogenesis of C. parvum.
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