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5S rRNA Data Bank

M Szymanski1, T Specht, M Z Barciszewska

  • 1Institute of Bioorganic Chemistry of the Polish Academy of Sciences, Noskowskiego 12, 61704 Poznan, Poland.

Nucleic Acids Research
|February 21, 1998
PubMed
Summary
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This updated database provides 1622 5S ribosomal RNA (rRNA) and 5S ribosomal DNA (rDNA) sequences from 888 species, aiding research in molecular biology and evolutionary studies.

Area of Science:

  • Molecular Biology
  • Genomics
  • Bioinformatics

Background:

  • 5S ribosomal RNA (rRNA) and its genes (5S rDNA) are essential components of ribosomes.
  • Comprehensive and updated sequence compilations are crucial for comparative genomics and evolutionary analyses.

Purpose of the Study:

  • To present an updated compilation of 5S rRNA and 5S rDNA nucleotide sequences.
  • To provide a centralized resource for researchers studying these genetic elements.

Main Methods:

  • Compilation of primary structures of 5S rRNAs and 5S rRNA genes.
  • Inclusion of sequences from diverse taxonomic groups: archaea, eubacteria, plastids, mitochondria, and eukaryotes.
  • Data organization based on the taxonomic position of the organisms.

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Main Results:

  • The database contains 1622 primary structures of 5S rRNAs and 5S rRNA genes.
  • Sequences are from 888 species, encompassing 58 archaeal, 427 eubacterial, 34 plastid, 9 mitochondrial, and 1094 eukaryotic sequences.
  • The updated compilation offers a significant expansion of the previously available data.

Conclusions:

  • The 5S rRNA Database serves as a valuable, updated resource for the scientific community.
  • Accessible online taxonomic browser and anonymous FTP facilitate data retrieval and analysis.
  • This compilation supports research in molecular evolution, taxonomy, and functional genomics of 5S rRNA.