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Updated: Aug 4, 2026

Associated Chromosome Trap for Identifying Long-range DNA Interactions
Published on: April 23, 2011
Cdkn2a, the cyclin-dependent kinase inhibitor encoding p16INK4a and p19ARF, is a candidate for the plasmacytoma
S Zhang1, E S Ramsay, B A Mock
1Laboratory of Genetics, Division of Basic Sciences, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-4255, USA.
Abstract:
Plasma cell tumor induction in mice by pristane is under multigenic control. BALB/c mice are susceptible to tumor development; whereas DBA/2 mice are resistant. Restriction fragment length polymorphisms between BALB/c and DBA/2 for Cdkn2a(p16) and Cdkn2b(p15), and between BALB/c and Mus spretus for Cdkn2c(p18(INK4c)) were used to position these loci with respect to the Pctr1 locus. These cyclin-dependent kinase (CDK) inhibitors mapped to a 6 cM interval of chromosome 4 between Ifna and Tal1. C.D2-Chr 4 congenic strains harboring DBA/2 alleles associated with the Pctr1 locus contained DBA/2 "resistant" alleles of the CDK4/CDK6 inhibitors p16 and p15. On sequencing p16 and p18 cDNAs, two different allelic variants within ankyrin repeat regions of p16 were found between BALB/c and DBA/2 mice. By using an assay involving PCR amplification and restriction enzyme digestion, allelic variants were typed among several inbred strains of mice. One of the variants, G232A, was specific to two inbred strains, BALB/cAn and ABP/Le, of mice and occurred in a highly conserved amino acid in both human and rat p16. When tested with wild-type (DBA/2) p16, both A134C and G232A BALB/c-specific variants of p16 were inefficient in their ability to inhibit the activity of cyclin D2/CDK4 in kinase assays with retinoblastoma protein, suggesting this defective, inherited allele plays an important role in the genetic susceptibility of BALB/c mice for plasmacytoma induction and that p16(INK4a) is a strong candidate for the Pctr1 locus.
Insights
Genetic control of plasma cell tumors in mice involves multiple genes. The study identifies a defective p16(INK4a) allele in susceptible BALB/c mice, suggesting it
Area of Science:
- Immunology
- Genetics
- Oncology
Background:
- Plasma cell tumor (PCT) development in mice, induced by pristane, is influenced by multiple genes.
- BALB/c mice are susceptible to PCT development, while DBA/2 mice are resistant, indicating a genetic basis for susceptibility.
Purpose of the Study:
- To identify the genetic loci controlling susceptibility to pristane-induced PCT.
- To investigate the role of cyclin-dependent kinase (CDK) inhibitors, specifically p16(INK4a), in PCT development.
Main Methods:
- Utilized restriction fragment length polymorphisms (RFLPs) to map specific gene loci.
- Employed sequencing of p16 and p18 cDNAs to identify allelic variants.
- Conducted kinase assays using retinoblastoma protein to assess the inhibitory activity of p16 variants.
Main Results:
- The Pctr1 locus, associated with PCT susceptibility, was mapped to chromosome 4.
- Congenic strains revealed that DBA/2 alleles confer resistance, linked to CDK4/CDK6 inhibitors p16 and p15.
- BALB/c mice possess distinct p16 allelic variants (A134C, G232A) that exhibit reduced inhibition of cyclin D2/CDK4 activity.
Conclusions:
- A defective BALB/c-specific p16(INK4a) allele impairs inhibition of cyclin D2/CDK4, contributing to plasmacytoma susceptibility.
- p16(INK4a) is a strong candidate gene for the Pctr1 locus, playing a critical role in the genetic control of PCT.
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