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Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
Published on: September 20, 2018
Chromosomal subunits in active genes have an altered conformation
Summary
Active genes in chick red blood cells are preferentially digested by deoxyribonuclease I, indicating their DNA is more accessible. This suggests active genes have a specific histone-DNA conformation making them sensitive to enzymatic digestion.
Area of Science:
- Molecular Biology
- Genetics
- Cell Biology
Background:
- Gene activity is regulated by chromatin structure.
- Differential DNA accessibility in nuclei suggests varying gene states.
Purpose of the Study:
- To investigate the differential susceptibility of active genes to nuclease digestion.
- To elucidate the role of chromatin conformation in DNA accessibility.
Main Methods:
- Nuclei isolated from chick red blood cells, fibroblasts, and brain were subjected to deoxyribonuclease I digestion.
- Staphylococcal nuclease digestion was performed on red cell nuclei.
- Further deoxyribonuclease I digestion was applied to staphylococcal nuclease-generated monomers.
Main Results:
- Deoxyribonuclease I preferentially digested globin DNA sequences in red blood cell nuclei, but not in other cell types.
- Nontranscribed ovalbumin sequences remained intact after deoxyribonuclease I digestion.
- Staphylococcal nuclease did not preferentially digest active globin genes, but subsequent deoxyribonuclease I digestion of resulting monomers did.
Conclusions:
- Active genes are preferentially digested by deoxyribonuclease I, suggesting increased DNA accessibility.
- This heightened sensitivity is likely due to a specific histone-DNA subunit conformation in active genes.
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