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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Splice-site mutations: a novel genetic mechanism of Crigler-Najjar syndrome type 1
S Gantla1, C T Bakker, B Deocharan
1Department of Medicine, Albert Einstein College of Medicine, Bronx, New York 10461, USA.
Insights
Crigler-Najjar syndrome type 1 (CN-1) is caused by mutations in introns of the UGT1A1 gene, leading to altered bilirubin processing. This study identifies novel intronic mutations affecting mRNA structure in CN-1 patients.
Area of Science:
- Genetics
- Molecular Biology
- Biochemistry
Background:
- Crigler-Najjar syndrome type 1 (CN-1) is a severe genetic disorder causing unconjugated hyperbilirubinemia due to bilirubin-UDP-glucuronosyltransferase deficiency.
- Previously, CN-1 was linked to mutations within the coding exons of the UGT1A1 gene, affecting the bilirubin-UGT1 enzyme.
- Understanding the genetic basis of CN-1 is crucial for potential therapeutic strategies.
Observation:
- Two CN-1 patients presented with mutations in the noncoding intronic regions of the UGT1A1 gene, deviating from previously identified exon mutations.
- Patient A had a homozygous splice-donor site mutation in intron 1, while Patient B was heterozygous for a splice-acceptor site mutation in intron 3, with an additional exon mutation.
- These intronic mutations were investigated by expressing amplified genomic DNA splice junctions in COS-7 cells to analyze mRNA structure.
Findings:
- Intronic mutations in the UGT1A1 gene were identified as a cause of CN-1 in the studied patients.
- Splice-site mutations resulted in the utilization of cryptic splice sites, leading to deletions in the processed bilirubin-UGT1 mRNA.
- This is the first report demonstrating intronic mutations causing CN-1 and detailing their impact on mRNA structure through ex vivo expression.
Implications:
- This research expands the known spectrum of UGT1A1 mutations associated with Crigler-Najjar syndrome type 1.
- The findings highlight the importance of intronic regions in gene function and disease pathogenesis.
- The ex vivo expression system provides a valuable method for studying the functional consequences of splice-site mutations in genetic disorders.
Abstract:
Crigler-Najjar syndrome type 1 (CN-1) is a recessively inherited, potentially lethal disorder characterized by severe unconjugated hyperbilirubinemia resulting from deficiency of the hepatic enzyme bilirubin-UDP-glucuronosyltransferase. In all CN-1 patients studied, structural mutations in one of the five exons of the gene (UGT1A1) encoding the uridinediphosphoglucuronate glucuronosyltransferase (UGT) isoform bilirubin-UGT1 were implicated in the absence or inactivation of the enzyme. We report two patients in whom CN-1 is caused, instead, by mutations in the noncoding intronic region of the UGT1A1 gene. One patient (A) was homozygous for a G-->C mutation at the splice-donor site in the intron, between exon 1 and exon 2. The other patient (B) was heterozygous for an A-->G shift at the splice-acceptor site in intron 3, and in the second allele a premature translation-termination codon in exon 1 was identified. Bilirubin-UGT1 mRNA is difficult to obtain, since it is expressed in the liver only. To determine the effects of these splice-junction mutations, we amplified genomic DNA of the relevant splice junctions. The amplicons were expressed in COS-7 cells, and the expressed mRNAs were analyzed. In both cases, splice-site mutations led to the use of cryptic splice sites, with consequent deletions in the processed mRNA. This is the first report of intronic mutations causing CN-1 and of the determination of the consequences of these mutations on mRNA structure, by ex vivo expression.
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