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Updated: Aug 11, 2026

Analysis of RNA Processing Reactions Using Cell Free Systems: 3' End Cleavage of Pre-mRNA Substrates in vitro
Published on: May 3, 2014
Coupling termination of transcription to messenger RNA maturation in yeast
C E Birse1, L Minvielle-Sebastia, B A Lee
1Sir William Dunn School of Pathology, South Parks Road, University of Oxford, Oxford OX1 3RE, UK.
Abstract:
The direct association between messenger RNA (mRNA) 3'-end processing and the termination of transcription was established for the CYC1 gene of Saccharomyces cerevisiae. The mutation of factors involved in the initial cleavage of the primary transcript at the poly(A) site (RNA14, RNA15, and PCF11) disrupted transcription termination at the 3' end of the CYC1 gene. In contrast, the mutation of factors involved in the subsequent polyadenylation step (PAP1, FIP1, and YTH1) had little effect. Thus, cleavage factors link transcription termination of RNA polymerase II with pre-mRNA 3'-end processing.
Insights
Messenger RNA (mRNA) 3'-end processing and transcription termination are directly linked. Cleavage factors, not polyadenylation factors, are crucial for coupling these processes for the CYC1 gene.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Messenger RNA (mRNA) processing is essential for gene expression.
- Transcription termination is a critical step in gene regulation.
- The interplay between mRNA 3 -end processing and transcription termination is not fully understood.
Purpose of the Study:
- To investigate the direct association between mRNA 3 -end processing and transcription termination.
- To determine the roles of specific processing factors in this linkage.
Main Methods:
- Utilized the CYC1 gene in Saccharomyces cerevisiae.
- Introduced mutations in genes encoding factors for mRNA cleavage and polyadenylation.
- Assessed the impact of these mutations on transcription termination.
Main Results:
- Mutations in cleavage factors (RNA14, RNA15, PCF11) disrupted transcription termination.
- Mutations in polyadenylation factors (PAP1, FIP1, YTH1) had minimal effect on termination.
- Established a direct link between cleavage factors and transcription termination.
Conclusions:
- Cleavage factors play a critical role in coupling transcription termination with pre-mRNA 3 -end processing.
- This linkage is mediated by factors involved in the initial cleavage step.
- RNA polymerase II transcription termination is directly influenced by mRNA 3 -end cleavage machinery.
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