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Updated: Jul 25, 2026

Genotypic Inference of HIV-1 Tropism Using Population-based Sequencing of V3
Published on: December 27, 2010
Genetically divergent strains of human immunodeficiency virus type 2 use multiple coreceptors for viral entry
S M Owen1, D Ellenberger, M Rayfield
1Retrovirus Diseases Branch, Division of AIDS, STD, and TB Laboratory Research, National Center for Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia 30333, USA.
Abstract:
Several members of the seven-transmembrane chemokine receptor family have been shown to serve, with CD4, as coreceptors for entry by human immunodeficiency virus type 1 (HIV-1). While coreceptor usage by HIV-1 primary isolates has been studied by several groups, there is only limited information available concerning coreceptor usage by primary HIV-2 isolates. In this study, we have analyzed coreceptor usage of 15 primary HIV-2 isolates, using lymphocytes from a donor with nonfunctional CCR5 (CCR5 -/-; homozygous 32-bp deletion). Based on the infections of PBMCs, seven of these primary isolates had an absolute requirement for CCR5 expression, whereas the remaining eight exhibited a broader coreceptor usage. All CCR5-requiring isolates were non-syncytium inducing, whereas isolates utilizing multiple coreceptors were syncytium inducing. Blocking experiments using known ligands for chemokine receptors provided indirect evidence for additional coreceptor utilization by primary HIV-2 isolates. Analysis of GHOST4 cell lines expressing various chemokine receptors (CCR1, CCR2b, CCR3, CCR4, CCR5, CXCR4, BONZO, and BOB) further defined specific coreceptor usage of primary HIV-2 isolates. The receptors used included CXCR4, CCR1-5, and the recently described receptors BONZO and BOB. However, the efficiency at which the coreceptors were utilized varied greatly among the various isolates. Analysis of V3 envelope sequences revealed no specific motif that correlated with coreceptor usage. Our data demonstrate that primary HIV-2 isolates are capable of using a broad range of coreceptors for productive infection in vitro. Additionally, our data suggest that expanded coreceptor usage by HIV-2 may correlate with disease progression.
Insights
This study reveals that human immunodeficiency virus type 2 (HIV-2) primary isolates utilize a wide array of coreceptors, including CCR5 and CXCR4, for infection. This broad coreceptor usage by HIV-2 may be linked to disease progression.
Area of Science:
- Virology
- Immunology
- Molecular Biology
Background:
- Human immunodeficiency virus type 1 (HIV-1) uses CD4 and chemokine receptors (e.g., CCR5, CXCR4) as coreceptors for cell entry.
- Limited data exists on coreceptor usage by primary human immunodeficiency virus type 2 (HIV-2) isolates.
Purpose of the Study:
- To analyze the coreceptor usage of 15 primary HIV-2 isolates.
- To investigate the relationship between coreceptor usage and viral characteristics (syncytium induction) and disease progression.
Main Methods:
- Infection of peripheral blood mononuclear cells (PBMCs) from a CCR5-deficient donor.
- Blocking experiments with chemokine receptor ligands.
- Infection of GHOST4 cell lines expressing various chemokine receptors (CCR1-5, CXCR4, BONZO, BOB).
- Analysis of V3 envelope sequences.
Main Results:
- Seven of 15 HIV-2 isolates strictly required CCR5, while eight showed broader coreceptor usage.
- CCR5-dependent isolates were non-syncytium inducing; multi-coreceptor isolates were syncytium inducing.
- HIV-2 isolates utilized CXCR4, CCR1-5, BONZO, and BOB, with varying efficiency.
- No specific V3 envelope motif correlated with coreceptor usage.
Conclusions:
- Primary HIV-2 isolates can use a diverse range of coreceptors for in vitro infection.
- Expanded coreceptor usage in HIV-2 may correlate with disease progression.
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