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MView: a web-compatible database search or multiple alignment viewer

N P Brown1, C Leroy, C Sander

  • 1European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge CB10 1SD, UK. brown@ebi.ac.uk

Bioinformatics (Oxford, England)
|June 20, 1998
PubMed
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MView is a versatile tool that transforms sequence database search results into a visual, colored multiple alignment. This HTML-based output is platform-independent, simplifying data visualization for researchers.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomics

Background:

  • Sequence database searches generate large datasets.
  • Visualizing alignment results is crucial for analysis.
  • Existing tools may lack platform independence or require specific software.

Purpose of the Study:

  • To present MView, a novel tool for visualizing sequence alignment data.
  • To offer a platform-independent solution for multiple alignment display.

Main Methods:

  • MView processes sequence database search results.
  • It converts results into a colored multiple alignment format.
  • Alternatively, MView can process existing multiple alignments.

Main Results:

Related Experiment Videos

  • The tool generates output in HTML format.
  • This HTML output is universally viewable across platforms.
  • No additional applications or applets are needed for viewing.

Conclusions:

  • MView provides an accessible and efficient method for visualizing sequence alignments.
  • Its HTML-based output enhances data sharing and accessibility in bioinformatics.
  • The tool simplifies the interpretation of sequence similarity and evolutionary relationships.