Discovery of critical Tol A-binding residues in the bactericidal toxin colicin N: a biophysical approach

E M Raggett1, G Bainbridge, L J Evans

  • 1Department of Biochemistry and Genetics, The Medical School, University of Newcastle Upon Tyne, UK.

Insights

Colicin N binds TolA with higher affinity when isolated, suggesting a cryptic binding site revealed upon receptor interaction. This study characterizes the TolA binding site on colicin N.

Area of Science:

  • Molecular Biology
  • Biochemistry
  • Microbiology

Background:

  • Colicins are bacteriocins produced by Escherichia coli that translocate across the bacterial envelope to exert their toxic effects.
  • Colicin translocation involves interactions with outer membrane receptors, periplasmic proteins like TolA or TonB, and finally insertion into the cytoplasmic membrane.
  • The N-terminal region of colicins is crucial for interacting with periplasmic proteins, but the precise binding mechanism and site remain incompletely understood.

Purpose of the Study:

  • To investigate the binding interaction between colicin N and the periplasmic protein TolA.
  • To characterize the TolA binding site on colicin N using biophysical and genetic methods.
  • To compare the binding behavior of isolated colicin N domains with the full-length protein.

Main Methods:

  • Isothermal titration microcalorimetry (ITC) was employed to quantify the binding affinity between colicin N and TolA.
  • Tryptophan fluorescence spectroscopy was used to monitor conformational changes and binding events.
  • Circular dichroism spectroscopy assessed the secondary structure of the isolated N-terminal domain.
  • Site-directed mutagenesis combined with ITC was utilized to map the TolA binding site.

Main Results:

  • The isolated N-terminal domain of colicin N exhibited a significantly higher binding affinity for TolA (Kd = 1 µM) compared to the full-length colicin (Kd = 18 µM).
  • The isolated N-terminal domain of colicin N appeared unstructured in solution, suggesting a potential role for primary receptor binding in inducing a structured TolA-binding conformation.
  • Mutagenesis and ITC studies revealed that the TolA binding site on colicin N is located further from the N-terminus and has a different sequence composition than previously hypothesized.

Conclusions:

  • The binding of colicin N to TolA is modulated by its interaction with outer membrane receptors, likely through the exposure of a cryptic TolA binding site.
  • The N-terminal domain of colicin N plays a critical role in TolA interaction, and its binding site is distinct and more C-terminal than initially predicted.
  • These findings provide insights into the intricate mechanism of colicin translocation and protein-protein interactions within the bacterial periplasm.