Identification of three major clones of multiply antibiotic-resistant Streptococcus pneumoniae in Taiwanese hospitals by multilocus sequence typing
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Updated: Oct 27, 2026

Multiplex PCR and Reverse Line Blot Hybridization Assay (mPCR/RLB)
Published on: August 6, 2011
Z Y Shi1, M C Enright, P Wilkinson
1School of Biological Sciences, University of Sussex, Brighton BN1 9QG, United Kingdom.
Abstract:
In this paper we demonstrate the advantages of a new molecular typing procedure, multilocus sequence typing, for the unambiguous characterization of penicillin-resistant pneumococci. The sequences of approximately 450-bp fragments of seven housekeeping genes were determined for 74 penicillin-resistant Taiwanese isolates of Streptococcus pneumoniae (MIC of penicillin > 0.5 microgram/ml). The combination of alleles at the seven loci defined an allelic profile for each strain, and a dendrogram, based on the pairwise mismatches in allelic profiles, grouped 86% of the isolates into one of three penicillin-resistant clones for which the MICs of penicillin were 1 to 2 microgram/ml. Isolates within each clone had identical alleles at all seven loci or differed at only a single locus, and the fingerprints of their pbp1A, pbp2B, and pbp2X genes were uniform. Isolates of the Taiwan-19F clone and the Taiwan-23F clone were resistant to penicillin, tetracycline, and erythromycin but were susceptible to chloramphenicol. A second serotype 23F clone and serotype 19F variants of this clone were resistant to penicillin, tetracycline, chloramphenicol, and, in some cases, erythromycin. Comparisons of the allelic profiles of the three major clones with those of reference isolates of the known penicillin-resistant clones showed that the Taiwan-19F and Taiwan-23F clones were previously undescribed, whereas the second serotype 23F clone was indistinguishable from the Spanish multidrug-resistant serotype 23F clone. Single isolates of the Spanish penicillin-resistant serotype 9V clone and the Spanish multidrug-resistant serotype 6B clone were also identified in the collection.
Insights
Multilocus sequence typing effectively characterizes penicillin-resistant Streptococcus pneumoniae, identifying novel Taiwanese clones and known Spanish multidrug-resistant strains. This method aids in understanding antibiotic resistance patterns in pneumococci.
Area of Science:
- Microbiology
- Molecular Biology
- Epidemiology
Background:
- Penicillin-resistant Streptococcus pneumoniae poses a significant public health threat.
- Accurate molecular typing is crucial for tracking the emergence and spread of resistant strains.
- Traditional typing methods may lack the discriminatory power for detailed clonal analysis.
Purpose of the Study:
- To evaluate the utility of multilocus sequence typing (MLST) for characterizing penicillin-resistant pneumococci.
- To identify and differentiate clonal lineages among Taiwanese penicillin-resistant Streptococcus pneumoniae isolates.
- To compare Taiwanese isolates with known international multidrug-resistant clones.
Main Methods:
- Sequencing of approximately 450-bp fragments from seven housekeeping genes for 74 penicillin-resistant Taiwanese Streptococcus pneumoniae isolates.
- Determination of allelic profiles for each isolate based on the combined sequences of the seven loci.
- Construction of a dendrogram using pairwise mismatches in allelic profiles to group isolates into clones.
Main Results:
- MLST successfully grouped 86% of isolates into three major penicillin-resistant clones, with MICs of penicillin ranging from 1 to 2 microgram/ml.
- Two novel clones, Taiwan-19F and Taiwan-23F, exhibited resistance to penicillin, tetracycline, and erythromycin, but susceptibility to chloramphenicol.
- A third clone was indistinguishable from the Spanish multidrug-resistant serotype 23F clone, and other Spanish clones (serotype 9V and 6B) were also identified.
Conclusions:
- Multilocus sequence typing provides unambiguous characterization of penicillin-resistant pneumococci, revealing distinct clonal structures.
- The identification of novel Taiwanese clones highlights the need for continuous surveillance of antibiotic resistance.
- MLST is a powerful tool for epidemiological studies, enabling the tracking of both emerging and established multidrug-resistant bacterial clones.
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