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Updated: Oct 13, 2026

Fluorescence in situ hybridization (FISH) Protocol in Human Sperm
Published on: September 1, 2009
[Search for microdeletions in the long arm of chromosome Y in 48 infertile men]
I Seifer1, S Amat, P Delgado-Viscogliosi
1Unité d'oncogénétique INSERM CRI 9502 & EA 2145, Clermont-Ferrand, France.
Abstract:
About 30% of infertilities are from male origin. They appear in some cases de novo and considered idiopathic. The aim of our work is to evaluate, in these cases, the Y chromosome long arm microdeletion prevalence within the AZF a, b and c regions by molecular biology technics. Were excluded from our study, azoo-oligospermia from hereditary, endocrine, obstructive origins or with a constitutional cytogenetic abnormality. 48 infertile men with a spermogram-proven azoo-oligospermia were studied. Among them, 30 were idiopathics, 8 out of them exhibited a genital infection past history or biological abnormalities suggesting partial obtruction of the genito-urinary tractus. 8 cases of varicocela and 10 of cryptorchidia were also studied. Peripheral blood DNA was extracted from each patient, then amplified by multiplex PCR with STS genomic markers from the 3 Y chromosome AZF zones. PCR products were then analysed on agarose gels. Considering the difficulty to affirm the absence of a signal in molecular biology, each suspicion of deletion was checked by multiplex PCR complication with the SRY marker. 5 Y chromosome long arm microdeletions were diagnosed among our 48 patients. All of them included the AZFc zone and the intragenic DAZ gene markers. Moreover a larger Y chromosome deletion encompassing the 3 AZF zones was diagnosed, and confirmed by the cytogenetic analysis. All the Y chromosome microdeletions were observed in the 22 truly idiopathic azoo/oligospermia, corresponding to a proportion of 22.7% which falls to 10.4% considering the whole population of 48 studied people (closer to the published data). The relatively high proportion of microdeletions found in our series, underlines the need of a strict patient selection to avoid unnecessary search for long arm Y chromosome microdeletions.
Insights
Y chromosome microdeletions are linked to male infertility. This study found these deletions in 22.7% of idiopathic cases, highlighting the need for careful patient selection in genetic testing.
Area of Science:
- Genetics
- Molecular Biology
- Reproductive Medicine
Context:
- Male infertility accounts for approximately 30% of all infertility cases.
- Idiopathic infertility, particularly azoospermia and oligospermia, often lacks a clear cause.
- Y chromosome long arm microdeletions are implicated in male factor infertility.
Purpose:
- To evaluate the prevalence of Y chromosome long arm microdeletions within the AZF (Azoospermia Factor) regions (AZFa, AZFb, AZFc) in men with idiopathic azoospermia or oligospermia.
- To utilize molecular biology techniques, specifically multiplex PCR with STS (Sequence Tagged Site) genomic markers, for accurate diagnosis.
- To differentiate microdeletion prevalence in truly idiopathic cases versus those with potential secondary causes.
Summary:
- A study analyzed 48 infertile men with azoospermia/oligospermia, excluding those with hereditary, endocrine, obstructive, or cytogenetic causes.
- Peripheral blood DNA was amplified using multiplex PCR targeting Y chromosome AZF regions. Suspected deletions were confirmed using the SRY marker.
- Five Y chromosome long arm microdeletions were diagnosed, all involving the AZFc region and DAZ gene markers. One larger deletion encompassed all three AZF regions.
- Microdeletions were found in 22.7% of the 22 truly idiopathic cases, representing 10.4% of the total cohort, aligning with published data.
- The findings underscore the importance of stringent patient selection to avoid unnecessary genetic testing for Y chromosome microdeletions.
Impact:
- Identifies a significant proportion of idiopathic male infertility linked to Y chromosome microdeletions.
- Provides crucial data for genetic counseling and diagnostic strategies in male infertility.
- Emphasizes the clinical utility of targeted Y chromosome microdeletion analysis in specific patient populations.
- Contributes to a better understanding of the genetic basis of male factor infertility.
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