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The HuGeMap Database: interconnection and visualization of human genome maps
1GIS Infobiogen, 7 rue Guy Môquet BP 8, 94801 Villejuif cedex, France. manu@infobiogen.fr
Nucleic Acids Research
|December 10, 1998
Summary
The HuGeMap database offers integrated human genome mapping data. It provides web and CORBA access, enabling seamless interconnection of genetic and physical maps for researchers.
Area of Science:
- Genomics
- Bioinformatics
Background:
- Genetic and physical maps are crucial for understanding the human genome.
- Integrating diverse genome mapping data presents significant challenges.
Purpose of the Study:
- To establish a centralized database for human genome maps.
- To facilitate data sharing and interoperability between genome map databases.
Main Methods:
- Developed the HuGeMap database for storing genetic and physical maps.
- Defined a standard genome map data format in collaboration with EBI.
- Implemented a CORBA server for database interconnection using IDL.
- Created graphical user interfaces (ZoomMap, MappetShow) for data visualization and comparison.
Main Results:
- HuGeMap provides comprehensive access to major human genome maps.
- A standardized data format and CORBA server enable seamless database interconnection.
- User-friendly interfaces facilitate efficient navigation, visualization, and comparison of genome maps.
Conclusions:
- HuGeMap enhances accessibility and usability of human genome mapping data.
- The developed infrastructure promotes data integration and collaborative research in genomics.