Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

IXDB, an X chromosome integrated database (update)

U Leser1, H Roest Crollius, H Lehrach

  • 1Technische Universität Berlin, Fachbereich 13, CIS Group, Einsteinufer 17, D-10587 Berlin, Germany.

Nucleic Acids Research
|December 10, 1998
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Hepatic gene expression variations in response to high-fat diet-induced impaired glucose tolerance using RNAseq analysis in collaborative cross mouse population.

Mammalian genome : official journal of the International Mammalian Genome Society·2019
Same author

Effect of Linearization in a WNT Signaling Model.

Computational and mathematical methods in medicine·2019
Same author

Data integration for identification of important transcription factors of STAT6-mediated cell fate decisions.

Genetics and molecular research : GMR·2016
Same author

The bromodomain protein BRD4 regulates the KEAP1/NRF2-dependent oxidative stress response.

Cell death & disease·2014
Same author

Molecular characterization of signalling pathways in cancer stem cells.

Ecancermedicalscience·2012
Same author

Huntington's disease: from gene to potential therapy.

Dialogues in clinical neuroscience·2011
Same journal

Correction to 'New origin firing is inhibited by APC/CCdh1 activation in S-phase after severe replication stress'.

Nucleic acids research·2026
Same journal

VeloRM: disentangling pre- and post-splicing RNA modification dynamics at single-cell resolution.

Nucleic acids research·2026
Same journal

Accessibility of telomeric overhangs to stabilizing small-molecule ligands.

Nucleic acids research·2026
Same journal

Multivalent interactions mediate SNAIL transcription factor stimulation of the nucleosome deacetylase activity of the CoREST complex.

Nucleic acids research·2026
Same journal

Genome-wide mapping of DNA G-quadruplexes in Trypanosoma brucei chromatin reveals enrichment in coding regions and transcription start sites.

Nucleic acids research·2026
Same journal

Correction to 'The Gene Ontology knowledgebase in 2026'.

Nucleic acids research·2026
See all related articles

The Integrated X Chromosome Database (IXDB) is updated to include more genomic data and links. This valuable resource provides researchers with a global view of human X chromosome mapping data.

Area of Science:

  • Genomics
  • Molecular Biology
  • Bioinformatics

Background:

  • Chromosome-specific databases integrate diverse data types (genetic, physical mapping, expression, sequence).
  • Genome-wide repositories often focus on single data types, necessitating specialized resources.
  • The Integrated X Chromosome Database (IXDB) provides a chromosomal-level view of human X chromosome data.

Purpose of the Study:

  • To present an update of the Integrated X Chromosome Database (IXDB).
  • To enhance IXDB with schema extensions for submaps and sequence information.
  • To expand IXDB's integration of physical and transcript mapping data and external database links.

Main Methods:

  • Schema extensions implemented for submap and sequence data storage.
  • Integration of additional physical and transcript mapping data.

Related Experiment Videos

  • Updated gene data aligned with HUGO Nomenclature Committee approved symbols.

    • Main Results:

    • IXDB now includes enhanced storage for submaps and sequence information.
    • Increased integration of physical and transcript mapping data and external database links.
    • Completely updated gene data based on approved nomenclature.

    Conclusions:

    • The updated IXDB offers a more comprehensive resource for human X chromosome research.
    • IXDB's expanded data and features support a global view of genomic data at the chromosomal level.
    • The database's high query rate indicates its value to the research community.