Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

PEDB: the Prostate Expression Database

V Hawkins1, D Doll, R Bumgarner

  • 1Department of Molecular Biotechnology and Department of Medicine, University of Washington, Seattle, WA 98195, USA.

Nucleic Acids Research
|December 10, 1998
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Neurotrauma and its mortality.

Rozhledy v chirurgii : mesicnik Ceskoslovenske chirurgicke spolecnosti·2026
Same author

[Are there any male-to-female disparities in recurrence rates after surgery for Pilonidal Disease? A meta-analysis comparing differing mixed-gender cohorts].

Khirurgiia·2026
Same author

Gender-specific outcomes in pilonidal sinus disease: Female outcomes after cleft lift surgery in a large prospective Danish cohort.

Colorectal disease : the official journal of the Association of Coloproctology of Great Britain and Ireland·2025
Same author

Long-term outcomes after cleft lift surgery for pilonidal sinus disease in post-pubertal adolescents: data from a prospective Danish cohort.

Colorectal disease : the official journal of the Association of Coloproctology of Great Britain and Ireland·2024
Same author

Magnetic, Mechanical and Thermal Modeling of Superconducting, Whole-body, Actively Shielded, 3 T MRI Magnets Wound Using MgB<sub>2</sub> Strands for Liquid Cryogen Free Operation.

IEEE transactions on applied superconductivity : a publication of the IEEE Superconductivity Committee·2022
Same author

The long-term recurrence rate of minimally invasive methods in pilonidal sinus disease therapy is still unclear.

Techniques in coloproctology·2021
Same journal

Correction to 'New origin firing is inhibited by APC/CCdh1 activation in S-phase after severe replication stress'.

Nucleic acids research·2026
Same journal

VeloRM: disentangling pre- and post-splicing RNA modification dynamics at single-cell resolution.

Nucleic acids research·2026
Same journal

Accessibility of telomeric overhangs to stabilizing small-molecule ligands.

Nucleic acids research·2026
Same journal

Multivalent interactions mediate SNAIL transcription factor stimulation of the nucleosome deacetylase activity of the CoREST complex.

Nucleic acids research·2026
Same journal

Genome-wide mapping of DNA G-quadruplexes in Trypanosoma brucei chromatin reveals enrichment in coding regions and transcription start sites.

Nucleic acids research·2026
Same journal

Correction to 'The Gene Ontology knowledgebase in 2026'.

Nucleic acids research·2026
See all related articles

The Prostate Expression Database (PEDB) provides a comprehensive resource for studying prostate gene expression. It offers tools to analyze expressed sequence tags (ESTs) and gene expression patterns in normal and diseased prostate tissues.

Area of Science:

  • Genomics
  • Bioinformatics
  • Prostate Cancer Research

Background:

  • Prostate gene expression data is fragmented across various sources.
  • Understanding gene expression is crucial for diagnosing and treating prostate conditions.

Purpose of the Study:

  • To create a centralized, curated database for prostate gene expression.
  • To develop analysis tools for exploring gene expression in normal and diseased states.

Main Methods:

  • Assembling and annotating prostate expressed sequence tags (ESTs) using CAP2 and public databases.
  • Utilizing the BLAST algorithm for sequence searching within the database.
  • Developing a Virtual Expression Analysis Tool (VEAT) for graphical comparison of gene expression across libraries.

Related Experiment Videos

Main Results:

  • The Prostate Expression Database (PEDB) houses ESTs and cDNA sequences from over 40 human prostate libraries.
  • Detailed library information, sequence assembly, and annotation are available.
  • The VEAT tool enables visualization of differential gene expression patterns.

Conclusions:

  • PEDB serves as a valuable, integrated resource for prostate gene expression research.
  • The database and its analysis tools facilitate comparative studies of gene expression.
  • PEDB supports research into prostate health and disease by providing accessible expression data.