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Spheroid Assay to Measure TGF-β-induced Invasion
Published on: November 16, 2011
Genetic alterations of the transforming growth factor beta receptor genes in pancreatic and biliary adenocarcinomas
M Goggins1, M Shekher, K Turnacioglu
1Department of Oncology, Johns Hopkins Medical Institutions, Baltimore, Maryland 21205, USA.
Abstract:
Transforming growth factor beta (TGF-beta) is an extracellular ligand that binds to a heterodimeric receptor, initiating signals that regulate growth, differentiation, and apoptosis. Many cancers, including pancreatic cancer, harbor defects in TGF-beta signaling and are resistant to TGF-beta-mediated growth suppression. Genetic alterations of DPC4, which encodes a DNA binding protein that is a downstream component of the pathway, most frequently occur in pancreatic and biliary carcinomas. We searched for other targets of mutation of the TGF-beta pathway in these cancers. We report somatic alterations of the TGF-beta type I receptor gene ALK-5. Homozygous deletions of ALK-5 were identified in 1 of 97 pancreatic and 1 of 12 biliary adenocarcinomas. A germ-line variant of ALK-5, presumably a polymorphism, was identified, but no somatic intragenic mutations were identified upon sequencing of all coding regions of ALK-5. Somatic alterations of the TGF-beta type II receptor gene (TGFBR2) were identified in 4 of 97 (4.1%) pancreas cancers, including a homozygous deletion in a replication error-negative cancer and three homozygous frameshift mutations of the poly(A) tract of the TGF-beta type II receptor in replication error-positive cancers. We also studied other related type I receptors of the TGF-beta superfamily. In a panel of pancreas cancers preselected for loss of heterozygosity at the ALK-1 locus, sequencing of all coding exons of the ALK-1 gene revealed no alterations. No homozygous deletions were detected in the ALK-1, ALK-2, ALK-3, or ALK-6 genes in a panel of 86 pancreatic cancer xenografts and 11 pancreatic cancer and 22 breast cancer cell lines. The rate of genetic inactivation of TGF-beta pathway members was determined in 45 pancreatic cancers. Eighty-two % of these pancreatic cancers had genetic inactivation of the DPC4, p15, ALK-5, or TGFBR2 genes. Our results indicate that the TGF-beta type I and type II receptor genes are selective targets of genetic inactivation in pancreatic and biliary cancers.
Insights
Transforming growth factor beta (TGF-beta) pathway defects are common in pancreatic cancer. This study found genetic inactivation of TGF-beta type I (ALK-5) and type II (TGFBR2) receptors in these cancers.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genetics
Background:
- Transforming growth factor beta (TGF-beta) signaling regulates cell growth, differentiation, and apoptosis.
- Many cancers, including pancreatic cancer, exhibit resistance to TGF-beta-mediated growth suppression due to pathway defects.
- Genetic alterations in DPC4 are frequent in pancreatic and biliary carcinomas, indicating a role for TGF-beta pathway dysfunction.
Purpose of the Study:
- To investigate further mutations in the TGF-beta signaling pathway in pancreatic and biliary cancers.
- To identify specific genetic alterations in TGF-beta receptors, ALK-5 and TGFBR2, within these cancer types.
Main Methods:
- Screening of pancreatic and biliary adenocarcinomas for alterations in the TGF-beta type I receptor gene (ALK-5).
- Analysis of TGF-beta type II receptor gene (TGFBR2) for somatic alterations, including deletions and frameshift mutations.
- Sequencing of other related type I receptors (ALK-1, ALK-2, ALK-3, ALK-6) in cancer cell lines and xenografts.
- Determination of the overall rate of genetic inactivation of key TGF-beta pathway members in pancreatic cancers.
Main Results:
- Homozygous deletions of ALK-5 were found in 1 pancreatic and 1 biliary adenocarcinoma.
- Somatic alterations in TGFBR2, including deletions and frameshift mutations, were identified in 4.1% of pancreatic cancers.
- Genetic inactivation of DPC4, p15, ALK-5, or TGFBR2 was observed in 82% of the analyzed pancreatic cancers.
Conclusions:
- The TGF-beta type I (ALK-5) and type II (TGFBR2) receptor genes are identified as selective targets of genetic inactivation in pancreatic and biliary cancers.
- These findings highlight the significant role of TGF-beta receptor mutations in the pathogenesis of these cancers.
- The high frequency of genetic inactivation across multiple TGF-beta pathway members underscores its importance in cancer development.
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