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Updated: May 11, 2026

Sequencing of Bacterial Microflora in Peripheral Blood: our Experience with HIV-infected Patients
Published on: June 11, 2011
No relationship between gastric pH, small bowel bacterial colonisation, and diarrhoea in HIV-1 infected patients
C M Wilcox1, K B Waites, P D Smith
1Departments of Medicine (Gastroenterology and Hepatology) and Pathology, University of Alabama at Birmingham, Birmingham, AL 39294-0007, USA.
Background/Aims:
Conclusive studies of small bowel bacterial overgrowth in patients with HIV-1 infection are limited. The relation was therefore determined between the quantity and species of bacteria in the proximal small intestine of HIV-1 infected patients and the presence of diarrhoea, gastric acidity, severity of immune deficiency, and clinical outcome.
Methods:
Bacteria in the duodenal fluids obtained endoscopically from 32 HIV-1 infected patients, 21 of whom had diarrhoea, and seven control subjects without HIV-1 risk factors were quantified and speciated. Gastric pH was determined at the time of endoscopy. Clinical follow up was performed to assess outcome.
Results:
Oropharyngeal Gram positive cocci were present in fluids from 28 patients (88%). Gram negative aerobic or facultatively anaerobic bacteria were present in fluids from 12 patients (38%), and strict anaerobes were detected in six patients (19%), but for both groups colony counts infrequently exceeded 10(4) colony forming units/ml. The number and species of bacteria did not correlate with the presence of diarrhoea, gastric pH, or CD4 lymphocyte count.
Conclusions:
Small bowel bacterial overgrowth is not common in HIV-1 infected patients, regardless of the presence of diarrhoea, and is not associated with hypochlorhydria
Insights
Small bowel bacterial overgrowth is uncommon in patients with Human Immunodeficiency Virus type 1 (HIV-1) infection. Bacterial quantity and species did not correlate with diarrhea, gastric acidity, or immune deficiency severity.
Area of Science:
- Gastroenterology
- Infectious Diseases
- Microbiology
Background:
- Limited conclusive studies exist on small bowel bacterial overgrowth (SBBO) in Human Immunodeficiency Virus type 1 (HIV-1) infected patients.
- Investigating the relationship between proximal small intestine bacterial composition and clinical factors in HIV-1 is crucial.
Purpose of the Study:
- To determine the relationship between the quantity and species of bacteria in the proximal small intestine of HIV-1 infected patients.
- To assess the correlation with diarrhea, gastric acidity, immune deficiency severity, and clinical outcome.
Main Methods:
- Duodenal fluids from 32 HIV-1 patients (21 with diarrhea) and 7 controls were analyzed for bacterial quantification and speciation.
- Gastric pH was measured during endoscopy, and clinical follow-up was conducted.
Main Results:
- Oropharyngeal Gram-positive cocci were prevalent (88%).
- Gram-negative aerobic/facultative anaerobic bacteria (38%) and strict anaerobes (19%) were detected, but colony counts rarely exceeded 10(4) CFU/ml.
- Bacterial numbers and species did not correlate with diarrhea, gastric pH, or CD4+ T-cell count.
Conclusions:
- Small bowel bacterial overgrowth is not common in HIV-1 infected patients.
- SBBO is not associated with diarrhea or hypochlorhydria in this population.
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