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Application of Stopped-flow Kinetics Methods to Investigate the Mechanism of Action of a DNA Repair Protein
Published on: March 31, 2010
Schizosaccharomyces pombe exo1 is involved in the same mismatch repair pathway as msh2 and pms1
1Institute of General Microbiology, University of Bern, Baltzerstrasse 4, CH-3012 Bern, Switzerland.
Abstract:
Besides the MutLS-like system, Schizosaccharomyces pombe has an additional pathway of mismatch repair. This minor pathway, producing short excision tracts, repairs C/C and, with lower efficiency, other mismatches also. We investigated the involvement of the exo1+, msh2+ and pms1+ genes in the two pathways. The exo1+ gene encodes a 5' to 3' exonuclease, while msh2+ and pms1+ are homologs of Escherichia coli mutS and mutL, respectively. Intragenic two-factor crosses showed that exo1+, msh2+ and pms1+ are involved in the major, but not in the C/C-correcting, pathway. Post-meiotic segregation frequencies and mitotic mutation rates in single and double mutants supported this finding. Furthermore, msh2 delta was epistatic over exo1 delta, and the ExoI enzyme is likely to be redundant with other exonucleases.
Insights
Schizosaccharomyces pombe possesses two DNA mismatch repair pathways. The major pathway utilizes exo1+, msh2+, and pms1+ genes, while a distinct minor pathway handles C/C repair independently.
Area of Science:
- Molecular Biology
- Genetics
- DNA Repair Mechanisms
Background:
- Schizosaccharomyces pombe exhibits a MutLS-like mismatch repair system.
- An additional, minor DNA repair pathway exists, characterized by short excision tracts.
- This minor pathway efficiently corrects C/C mismatches and other mismatches less effectively.
Purpose of the Study:
- To investigate the roles of exo1+, msh2+, and pms1+ genes in both major and minor DNA mismatch repair pathways in Schizosaccharomyces pombe.
- To determine the genetic interactions and functional redundancy within these repair systems.
Main Methods:
- Intragenic two-factor crosses were employed to analyze gene involvement.
- Post-meiotic segregation frequencies were measured.
- Mitotic mutation rates in single and double mutants were assessed.
Main Results:
- The genes exo1+, msh2+, and pms1+ were found to be essential for the major DNA mismatch repair pathway.
- These genes are not involved in the C/C-correcting minor pathway.
- msh2 delta was epistatic over exo1 delta, suggesting a hierarchical relationship.
- The ExoI enzyme appears to have redundant functions with other exonucleases.
Conclusions:
- Schizosaccharomyces pombe utilizes distinct genetic components for its major and minor DNA mismatch repair pathways.
- The major pathway relies on exo1+, msh2+, and pms1+, while the C/C-specific minor pathway operates independently of these genes.
- Genetic epistasis and enzyme redundancy provide insights into the functional organization of DNA repair in this organism.
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