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Updated: Aug 13, 2026

Biophysical Characterization of Flagellar Motor Functions
Published on: January 18, 2017
Mechanism of self-association and filament capping by flagellar HAP2
F Vonderviszt1, K Imada, Y Furukawa
1International Institute for Advanced Research, Matsushita Electric Industrial Co., Ltd, 3-4 Hikaridai, Seika, 619-0237, Japan. feri@elod.vein.hu
Abstract:
HAP2 forms a capping structure, which binds very tightly to the distal end of flagellar filaments and still allows insertion of flagellin subunits below the cap by an unknown mechanism. Terminal regions of HAP2 from Salmonella typhimurium were found to be quickly degraded by various proteases, indicating that HAP2 also possesses disordered terminal regions like other axial proteins of bacterial flagellum. Removal of these portions by trypsin results in a fragment of 40 kDa (HP40), which lacks 42 NH2-terminal and 51 COOH-terminal residues. HAP2 in solution readily associates into a decameric structure without any significant population of intermediate oligomeric forms. The HP40 fragments, however, do not form decamers, while they can assemble into pentamers, as revealed by chemical cross-linking and analytical ultracentrifugation. Decameric HAP2 also dissociates into pentamers and smaller oligomers upon a heat induced conformational transition around 36 degreesC. While the highly mobile terminal regions are immobilized in decameric HAP2 complexes, they are still largely disordered in the pentameric state. These results demonstrate that the intersubunit interactions within the pentamers are mainly through the HP40 portions, whereas the terminal regions are responsible for association of pentamers into decameric complexes. Several observations indicate that HAP2 performs its capping function as a pentamer. We suggest that binding of the pentameric HAP2 cap to the filament is mediated by the highly flexible terminal regions. Indeed, HP40 fragments are unable to cap the end of filaments, while removal of about 30 residues from both terminal regions of HAP2 results in a highly reduced capping ability. A model is presented to explain the molecular mechanism of capping, in which conformational entropy in the disordered terminal regions moderates the otherwise too tight HAP2-filament interactions to allow insertion of flagellin subunits below the cap.
Insights
The bacterial flagellar protein HAP2 forms a pentameric cap structure essential for filament assembly. Its flexible terminal regions mediate binding to the flagellar filament, allowing continued growth.
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Bacterial flagella are crucial for motility and virulence.
- HAP2 is a protein forming the cap structure at the distal end of flagellar filaments.
- The precise mechanism of HAP2 capping and its role in flagellar growth remain unclear.
Purpose of the Study:
- To investigate the quaternary structure of HAP2 and its functional domains.
- To elucidate the molecular mechanism by which HAP2 caps flagellar filaments.
- To understand how HAP2 facilitates continuous flagellar assembly.
Main Methods:
- Protease digestion to generate HAP2 fragments.
- Chemical cross-linking and analytical ultracentrifugation to determine oligomeric states.
- Heat-induced conformational transition studies.
- Filament capping assays with HAP2 fragments.
Main Results:
- HAP2 readily forms decameric structures in solution.
- A 40 kDa fragment (HP40), lacking terminal regions, forms pentamers but not decamers.
- Decameric HAP2 dissociates into pentamers upon heating.
- Terminal regions are crucial for decamer formation and filament capping, while HP40 mediates pentamer assembly.
Conclusions:
- HAP2 functions as a pentameric cap, with terminal regions mediating filament binding.
- The flexible terminal regions moderate HAP2-filament interactions, allowing flagellin subunit insertion.
- A model is proposed where terminal region entropy regulates capping and filament elongation.
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