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Updated: Aug 3, 2026

VDJ-Seq: Deep Sequencing Analysis of Rearranged Immunoglobulin Heavy Chain Gene to Reveal Clonal Evolution Patterns of B Cell Lymphoma
Published on: December 28, 2015
Molecular mechanisms and selection influence the generation of the human V lambda J lambda repertoire
N L Farner1, T Dörner, P E Lipsky
1Department of Internal Medicine, Harold C. Simmons Arthritis Research Center, University of Texas Southwestern Medical Center, Dallas 75235, USA.
Human B cell development involves V lambda gene expression. This study reveals specific V lambda genes are overexpressed or regulated in nonproductive and productive repertoires, offering insights into immune system shaping.
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- The human immune system relies on a diverse repertoire of B cells for effective antibody production.
- B cell development involves the rearrangement of immunoglobulin genes, including the lambda light chain locus.
Purpose of the Study:
- To characterize the human V lambda (Vλ) light chain gene repertoire.
- To investigate the expression patterns and regulation of Vλ genes in B cells.
Main Methods:
- Single-cell PCR technique applied to genomic DNA from individual peripheral B cells.
- Analysis of V lambda and J lambda gene usage and rearrangements.
- Assessment of terminal deoxynucleotidyltransferase (TdT) and exonuclease activity.
Main Results:
- 23 out of 30 functional V lambda genes were detected in productive and nonproductive repertoires.
- Specific V lambda genes showed differential overexpression in nonproductive and productive repertoires.
- Negative regulation of certain V lambda genes was observed, indicating selection pressures.
- High frequency of TdT and exonuclease activity in nonproductive rearrangements, yet consistent CDR3 length.
Conclusions:
- The human V lambda repertoire is shaped by both overexpression and negative regulation of specific V lambda genes.
- Despite enzymatic activities, the CDR3 length is tightly regulated, suggesting molecular control mechanisms.
- These findings provide new insights into the complexity and regulation of the human V lambda repertoire.
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