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Journal of Bioinformatics and Computational Biology|July 20, 2012
Observation conflict resolution in steady-state metabolic network dynamics analysisA Ercument Cicek, Gultekin OzsoyogluBioinformatics (Oxford, England)|June 17, 2014
MIRA: mutual information-based reporter algorithm for metabolic networksA Ercument Cicek, Kathryn Roeder, Gultekin OzsoyogluHealth Information Science and Systems|April 1, 2015
iPathCase(KEGG): An iPad interface for KEGG metabolic pathwaysStephen R Johnson, Xinjian Qi, A Ercument Cicek, et al.Plos Computational Biology|January 24, 2013
ADEMA: an algorithm to determine expected metabolite level alterations using mutual informationA Ercument Cicek, Ilya Bederman, Leigh Henderson, et al.Journal of Bioinformatics and Computational Biology|July 20, 2012
A new metabolomics analysis technique: steady-state metabolic network dynamics analysisAli Cakmak, Xinjian Qi, A Ercument Cicek, et al.BMC Systems Biology|September 7, 2013
An online model composition tool for system biology modelsSarp A Coskun, A Ercument Cicek, Nicola Lai, et al.BMC Systems Biology|November 11, 2011
PathCase-SB architecture and database designAli Cakmak, Xinjian Qi, Sarp A Coskun, et al.BMC Bioinformatics|March 8, 2008
Discovering gene annotations in biomedical text databasesAli Cakmak, Gultekin OzsoyogluPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|November 10, 2007
Annotating genes using textual patternsAli Cakmak, Gultekin OzsoyogluBioinformatics (Oxford, England)|September 4, 2007
Mining biological networks for unknown pathwaysAli Cakmak, Gultekin OzsoyogluPageof 6