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Biorxiv : the Preprint Server for Biology|August 16, 2024
Peptide-aware chemical language model successfully predicts membrane diffusion of cyclic peptidesAaron L Feller, Claus O WilkeJournal of Chemical Information and Modeling|January 8, 2025
Peptide-Aware Chemical Language Model Successfully Predicts Membrane Diffusion of Cyclic PeptidesAaron L Feller, Claus O WilkeJournal of Chemical Information and Modeling|July 13, 2026
Scaling SMILES-Based Chemical Language Models for Therapeutic Peptide EngineeringAaron L Feller, Maxim Secor, Sebastian Swanson, et al.Patterns (New York, N.Y.)|December 18, 2023
Using alternative SMILES representations to identify novel functional analogues in chemical similarity vector searchesClayton W Kosonocky, Aaron L Feller, Claus O Wilke, et al.Biorxiv : the Preprint Server for Biology|January 16, 2026
PeptideMTR: Scaling SMILES-Based Language Models for Therapeutic Peptide EngineeringAaron L Feller, Maxim Secor, Sebastian Swanson, et al.Biorxiv : the Preprint Server for Biology|June 15, 2026
Overestimating zero-shot fitness prediction: Broad benchmarks mask local failures and practical limitationsPhillip R Woolley, Aaron L Feller, Andrew D Ellington, et al.Applied and Environmental Microbiology|November 17, 2022
Evidence for Widespread Class II Microcins in Enterobacterales GenomesT Jeffrey Cole, Jennifer K Parker, Aaron L Feller, et al.Nature Communications|July 2, 2025
Antibacterial microcins are ubiquitous and functionally diverse across bacterial communitiesJennifer K Parker, Aaron L Feller, Richard Gu, et al.Biorxiv : the Preprint Server for Biology|March 23, 2026
Validation and analysis of 12,000 AI-driven CAR-T designs in the Bits to Binders competitionClayton W Kosonocky, Alex M Abel, Aaron L Feller, et al.Pageof 1