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Annual Review of Food Science and Technology|January 27, 2017
Translating Omics to Food MicrobiologyAaron M Walsh, Fiona Crispie, Marcus J Claesson, et al.
Microbiome|March 21, 2018
Species classifier choice is a key consideration when analysing low-complexity food microbiome dataAaron M Walsh, Fiona Crispie, Orla O'Sullivan, et al.
Msystems|November 9, 2016
Microbial Succession and Flavor Production in the Fermented Dairy Beverage KefirAaron M Walsh, Fiona Crispie, Kieran Kilcawley, et al.
Msystems|March 3, 2017
Correction for Walsh et al., Microbial Succession and Flavor Production in the Fermented Dairy Beverage KefirAaron M Walsh, Fiona Crispie, Kieran Kilcawley, et al.
Applied and Environmental Microbiology|June 20, 2017
Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety RisksAaron M Walsh, Fiona Crispie, Kareem Daari, et al.
Msystems|November 11, 2020
Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance DeterminantsJohn Leech, Raul Cabrera-Rubio, Aaron M Walsh, et al.
NPJ Science of Food|August 16, 2023
Comparison of the relative impacts of acute consumption of an inulin-enriched diet, milk kefir or a commercial probiotic product on the human gut microbiome and metabolomeLiam H Walsh, Aaron M Walsh, Isabel Garcia-Perez, et al.
Iscience|October 16, 2023
Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathwaysLiam H Walsh, Mairéad Coakley, Aaron M Walsh, et al.
FEMS Microbiology Reviews|February 1, 2023
Integrated molecular approaches for fermented food microbiome researchAaron M Walsh, John Leech, Curtis Huttenhower, et al.
Scientific Reports|March 13, 2019
The dynamics of the antibiotic resistome in the feces of freshly weaned pigs following therapeutic administration of oxytetracyclineMahdi Ghanbari, Viviana Klose, Fiona Crispie, et al.
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