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BMC Biology|July 7, 2018
FlashFry: a fast and flexible tool for large-scale CRISPR target designAaron McKenna, Jay ShendureCell Systems|April 22, 2022
Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical developmentDonovan J Anderson, Florian M Pauler, Aaron McKenna, et al.Science (New York, N.Y.)|May 28, 2016
Whole-organism lineage tracing by combinatorial and cumulative genome editingAaron McKenna, Gregory M Findlay, James A Gagnon, et al.Nucleic Acids Research|June 6, 2019
Massively parallel profiling and predictive modeling of the outcomes of CRISPR/Cas9-mediated double-strand break repairWei Chen, Aaron McKenna, Jacob Schreiber, et al.American Journal of Human Genetics|July 18, 2017
CRISPR/Cas9-Mediated Scanning for Regulatory Elements Required for HPRT1 Expression via Thousands of Large, Programmed Genomic DeletionsMolly Gasperini, Gregory M Findlay, Aaron McKenna, et al.Nature Biotechnology|April 3, 2018
Simultaneous single-cell profiling of lineages and cell types in the vertebrate brainBushra Raj, Daniel E Wagner, Aaron McKenna, et al.Cell Reports|May 21, 2020
Predicting mRNA Abundance Directly from Genomic Sequence Using Deep Convolutional Neural NetworksVikram Agarwal, Jay ShendureGenome Research|April 3, 2012
Ultra-low-input, tagmentation-based whole-genome bisulfite sequencingAndrew Adey, Jay ShendurePageof 47