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Bioinformatics (Oxford, England)|December 7, 2014
SMARTS: reconstructing disease response networks from multiple individuals using time series gene expression dataAaron Wise, Ziv Bar-JosephJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 7, 2015
cDREM: inferring dynamic combinatorial gene regulationAaron Wise, Ziv Bar-JosephBioinformatics (Oxford, England)|June 13, 2012
Matching experiments across species using expression values and textual informationAaron Wise, Zoltán N Oltvai, Ziv Bar-JosephBMC Systems Biology|December 17, 2013
Carbon catabolite repression correlates with the maintenance of near invariant molecular crowding in proliferating E. coli cellsYi Zhou, Alexei Vazquez, Aaron Wise, et al.Bioinformatics (Oxford, England)|May 8, 2004
Analyzing time series gene expression dataZiv Bar-JosephBMC Bioinformatics|April 7, 2006
STEM: a tool for the analysis of short time series gene expression dataJason Ernst, Ziv Bar-JosephBioinformatics (Oxford, England)|May 1, 2019
Continuous-state HMMs for modeling time-series single-cell RNA-Seq dataChieh Lin, Ziv Bar-JosephBioinformatics (Oxford, England)|October 17, 2017
MethRaFo: MeDIP-seq methylation estimate using a Random Forest RegressorJun Ding, Ziv Bar-JosephBioinformatics (Oxford, England)|September 3, 2016
Genome wide predictions of miRNA regulation by transcription factorsMatthew Ruffalo, Ziv Bar-JosephJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 15, 2007
A patient-gene model for temporal expression profiles in clinical studiesNaftali Kaminski, Ziv Bar-JosephPageof 17