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Journal of Molecular Biology|March 24, 2024
NNDB: An Expanded Database of Nearest Neighbor Parameters for Predicting Stability of Nucleic Acid Secondary StructuresAbhinav Mittal, Douglas H Turner, David H MathewsBiorxiv : the Preprint Server for Biology|August 6, 2025
AlignmentFold and AlignmentPartition: Improving the align-then-fold approach for RNA secondary structure predictionAbhinav Mittal, David H MathewsCurrent Opinion in Structural Biology|May 23, 2006
Prediction of RNA secondary structure by free energy minimizationDavid H Mathews, Douglas H TurnerCurrent Protocols in Nucleic Acid Chemistry|April 23, 2008
Use of chemical modification to elucidate RNA folding pathwaysDavid H Mathews, Douglas H TurnerJournal of Molecular Biology|March 21, 2002
Dynalign: an algorithm for finding the secondary structure common to two RNA sequencesDavid H Mathews, Douglas H TurnerNucleic Acids Research|November 3, 2009
NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structureDouglas H Turner, David H MathewsBiochemistry|January 16, 2002
Experimentally derived nearest-neighbor parameters for the stability of RNA three- and four-way multibranch loopsDavid H Mathews, Douglas H TurnerCurrent Protocols|November 14, 2024
Using the RNAstructure Software Package to Predict Conserved RNA StructuresAbhinav Mittal, Sara E Ali, David H MathewsCurrent Protocols|July 24, 2023
RNA Secondary Structure Analysis Using RNAstructureSara E Ali, Abhinav Mittal, David H MathewsCurrent Protocols in Nucleic Acid Chemistry|April 23, 2008
RNA secondary structure predictionDavid H Mathews, Douglas H Turner, Michael ZukerPageof 27