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Briefings in Bioinformatics|August 27, 2025
UnCOT-AD: Unpaired Cross-Omics Translation Enables Multi-Omics Integration for Alzheimer's Disease PredictionAbrar Rahman Abir, Sajib Acharjee Dip, Liqing ZhangNAR Genomics and Bioinformatics|August 11, 2026
CFM-GP: unified conditional flow matching to learn gene perturbation across cell typesAbrar Rahman Abir, Sajib Acharjee Dip, Liqing ZhangBioinformatics Advances|December 15, 2025
RNA-EFM: energy-based flow matching for protein-conditioned RNA sequence-structure co-designAbrar Rahman Abir, Liqing ZhangBriefings in Bioinformatics|March 26, 2026
Large language model agents for biological intelligence across genomics, proteomics, spatial biology, and biomedicineSajib Acharjee Dip, Dipanwita Mallick, Uddip Acharjee Shuvo, et al.Briefings in Bioinformatics|August 27, 2025
LOCAS: multilabel mRNA localization with supervised contrastive learningAbrar Rahman Abir, Md Toki Tahmid, M Saifur RahmanBriefings in Bioinformatics|October 26, 2025
BioLLMNet: enhancing RNA-interaction prediction with a specialized cross-LLM transformation networkAbrar Rahman Abir, Md Toki Tahmid, Md Shamsuzzoha BayzidBriefings in Bioinformatics|May 2, 2025
DeepRNA-Twist: language-model-guided RNA torsion angle prediction with attention-inception networkAbrar Rahman Abir, Md Toki Tahmid, Rafiqul Islam Rayan, et al.Bioinformatics Advances|January 9, 2026
DCGAT-DTI: dynamic cross-graph attention network for drug-target interaction predictionAbrar Rahman Abir, Muhtasim Noor Alif, Wencai Zhang, et al.Journal of Experimental Botany|May 8, 2026
Cross-Species Plant Single-Cell Analysis: Community Challenges and Shared SolutionsMaryam Haghan, Tran N Chau, Razan Alajoleen, et al.Biochemical Genetics|February 1, 2008
Adaptive evolution and frequent gene conversion in the brain expressed X-linked gene family in mammalsLiqing ZhangPageof 25