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Methods (San Diego, Calif.)|April 30, 2013
Evaluating thermodynamic models of enhancer activity on cellular resolution gene expression dataAbul Hassan Samee, Saurabh SinhaPlos Computational Biology|March 8, 2014
Quantitative modeling of a gene's expression from its intergenic sequenceMd Abul Hassan Samee, Saurabh SinhaBiophysical Journal|March 13, 2015
Incorporating chromatin accessibility data into sequence-to-expression modelingPei-Chen Peng, Md Abul Hassan Samee, Saurabh SinhaPlos Computational Biology|September 24, 2010
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repressionXin He, Md Abul Hassan Samee, Charles Blatti, et al.Molecular Biology of the Cell|July 24, 2023
Noncanonical binding of transcription factors: time to revisit specificity?Md Abul Hassan SameeMolecular Biology and Evolution|October 8, 2013
Simulations of enhancer evolution provide mechanistic insights into gene regulationThyago Duque, Md Abul Hassan Samee, Majid Kazemian, et al.Methods (San Diego, Calif.)|June 4, 2013
Global parameter estimation for thermodynamic models of transcriptional regulationYerzhan Suleimenov, Ahmet Ay, Md Abul Hassan Samee, et al.Genome Biology and Evolution|September 1, 2014
Evidence for deep regulatory similarities in early developmental programs across highly diverged insectsMajid Kazemian, Kushal Suryamohan, Jia-Yu Chen, et al.Nucleic Acids Research|July 3, 2023
Structural underpinnings of mutation rate variations in the human genomeZian Liu, Md Abul Hassan SameePageof 25