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Molecular Biology of the Cell|July 24, 2023
Noncanonical binding of transcription factors: time to revisit specificity?Md Abul Hassan SameeMethods (San Diego, Calif.)|April 30, 2013
Evaluating thermodynamic models of enhancer activity on cellular resolution gene expression dataAbul Hassan Samee, Saurabh SinhaPlos Computational Biology|March 8, 2014
Quantitative modeling of a gene's expression from its intergenic sequenceMd Abul Hassan Samee, Saurabh SinhaNucleic Acids Research|July 3, 2023
Structural underpinnings of mutation rate variations in the human genomeZian Liu, Md Abul Hassan SameeBiophysical Journal|March 13, 2015
Incorporating chromatin accessibility data into sequence-to-expression modelingPei-Chen Peng, Md Abul Hassan Samee, Saurabh SinhaBriefings in Bioinformatics|February 22, 2024
CRISPR-DIPOFF: an interpretable deep learning approach for CRISPR Cas-9 off-target predictionMd Toufikuzzaman, Md Abul Hassan Samee, M Sohel RahmanCell Systems|January 21, 2019
A De Novo Shape Motif Discovery Algorithm Reveals Preferences of Transcription Factors for DNA Shape Beyond Sequence MotifsMd Abul Hassan Samee, Benoit G Bruneau, Katherine S PollardBMC Molecular and Cell Biology|September 1, 2021
Systematic identification of non-canonical transcription factor motifsLuis Chumpitaz-Diaz, Md Abul Hassan Samee, Katherine S PollardPlos Computational Biology|September 24, 2010
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repressionXin He, Md Abul Hassan Samee, Charles Blatti, et al.Pageof 5