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Nature Communications|August 17, 2021
LineageOT is a unified framework for lineage tracing and trajectory inferenceAden Forrow, Geoffrey SchiebingerJournal of Mathematical Biology|April 17, 2026
Trajectory inference for a branching SDE model of cell differentiation via lineage tracingElias Ventre, Aden Forrow, Nitya Gadhiwala, et al.Physical Review Letters|July 29, 2017
Mode Selection in Compressible Active Flow NetworksAden Forrow, Francis G Woodhouse, Jörn DunkelBioinformatics (Oxford, England)|August 5, 2024
Cellular proliferation biases clonal lineage tracing and trajectory inferenceBecca Bonham-Carter, Geoffrey SchiebingerProceedings of the National Academy of Sciences of the United States of America|July 7, 2016
Stochastic cycle selection in active flow networksFrancis G Woodhouse, Aden Forrow, Joanna B Fawcett, et al.Annual Review of Biomedical Data Science|November 14, 2024
Spatial Transcriptomics Brings New Challenges and Opportunities for Trajectory InferenceMatthieu Heitz, Yujia Ma, Sharvaj Kubal, et al.Nature Communications|November 28, 2019
Learning dynamical information from static protein and sequencing dataPhilip Pearce, Francis G Woodhouse, Aden Forrow, et al.Plos Computational Biology|December 3, 2021
Optimal transport analysis reveals trajectories in steady-state systemsStephen Zhang, Anton Afanassiev, Laura Greenstreet, et al.Cell Systems|September 26, 2023
DNA-GPS: A theoretical framework for optics-free spatial genomics and synthesis of current methodsLaura Greenstreet, Anton Afanassiev, Yusuke Kijima, et al.Cell Systems|November 30, 2024
Tracking the gene expression programs and clonal relationships that underlie mast, myeloid, and T lineage specification from stem cellsYale S Michaels, Matthew C Major, Becca Bonham-Carter, et al.Pageof 3