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Methods in Molecular Biology (Clifton, N.J.)|May 26, 2022
Predicting Type III Effector Proteins Using the Effectidor Web ServerNaama Wagner, Doron Teper, Tal PupkoJournal of Molecular Biology|June 6, 2022
EvoRator: Prediction of Residue-level Evolutionary Rates from Protein Structures Using Machine LearningNatan Nagar, Nir Ben Tal, Tal PupkoMolecular Biology and Evolution|August 3, 2014
Alignment errors strongly impact likelihood-based tests for comparing topologiesEli Levy Karin, Edward Susko, Tal PupkoJournal of Immunology (Baltimore, Md. : 1950)|October 2, 2023
Evaluation of the Ability of AlphaFold to Predict the Three-Dimensional Structures of Antibodies and EpitopesKsenia Polonsky, Tal Pupko, Natalia T FreundVirology|October 25, 2017
Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to "Megavirales"Arcady Mushegian, Eli Levy Karin, Tal PupkoMolecular Immunology|October 25, 2008
A machine-learning approach for predicting B-cell epitopesNimrod D Rubinstein, Itay Mayrose, Tal PupkoNucleic Acids Research|April 18, 2015
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parametersItamar Sela, Haim Ashkenazy, Kazutaka Katoh, et al.Bioinformatics (Oxford, England)|January 24, 2007
Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary ratesMatan Ninio, Eyal Privman, Tal Pupko, et al.Nucleic Acids Research|May 23, 2019
M1CR0B1AL1Z3R-a user-friendly web server for the analysis of large-scale microbial genomics dataOren Avram, Dana Rapoport, Shir Portugez, et al.Bioinformatics (Oxford, England)|September 11, 2012
Uncovering the co-evolutionary network among prokaryotic genesOfir Cohen, Haim Ashkenazy, David Burstein, et al.Pageof 19