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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|May 23, 2002
A structural EM algorithm for phylogenetic inferenceNir Friedman, Matan Ninio, Itsik Pe'er, et al.
Genome Biology and Evolution|November 21, 2014
Indel reliability in indel-based phylogenetic inferenceHaim Ashkenazy, Ofir Cohen, Tal Pupko, et al.
Bioinformatics (Oxford, England)|April 12, 2024
Effect of tokenization on transformers for biological sequencesEdo Dotan, Gal Jaschek, Tal Pupko, et al.
Nature Communications|February 27, 2019
Model selection may not be a mandatory step for phylogeny reconstructionShiran Abadi, Dana Azouri, Tal Pupko, et al.
Frontiers in Immunology|February 15, 2018
Interleukin-6 and Interferon-α Signaling <i>via</i> JAK1-STAT Differentially Regulate Oncolytic versus Cytoprotective Antiviral StatesOded Danziger, Tal Pupko, Eran Bacharach, et al.
Bioinformatics (Oxford, England)|July 25, 2007
Towards realistic codon models: among site variability and dependency of synonymous and non-synonymous ratesItay Mayrose, Adi Doron-Faigenboim, Eran Bacharach, et al.
Frontiers in Plant Science|June 19, 2023
Complete genome sequence of an Israeli isolate of <i>Xanthomonas hortorum</i> pv. pelargonii strain 305 and novel type III effectors identified in <i>Xanthomonas</i>Naama Wagner, Daniella Ben-Meir, Doron Teper, et al.
Molecular Biology and Evolution|June 18, 2004
Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superiorItay Mayrose, Dan Graur, Nir Ben-Tal, et al.
Molecular Biology and Evolution|June 10, 2005
A model-based approach for detecting coevolving positions in a moleculeJulien Dutheil, Tal Pupko, Alain Jean-Marie, et al.
BMC Bioinformatics|September 16, 2009
Epitopia: a web-server for predicting B-cell epitopesNimrod D Rubinstein, Itay Mayrose, Eric Martz, et al.
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